HsaINT0188416 @ hg19
Intron Retention
Gene
ENSG00000197863 | ZNF790
Description
zinc finger protein 790 [Source:HGNC Symbol;Acc:33114]
Coordinates
chr19:37308331-37314282:-
Coord C1 exon
chr19:37314187-37314282
Coord A exon
chr19:37311017-37314186
Coord C2 exon
chr19:37308331-37311016
Length
3170 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTACCTTCTTATTTTTCAGACA
3' ss Score
11.57
Exon sequences
Seq C1 exon
GTTTTTGCATTTATCAGCCAGAAGCGTTCTCTTTATTGGAGAAAGGGAAAGAGCCCTGGAAGATTTTGAGGGATGAGACAAGAGGACCTTGCCCAG
Seq A exon
GTGAGTGAGGGCTGAACACGCACAAGGAGGCCATTGTTGTGGATAACAGCTCAGCTGCACAGTGAGGCAGCAACACCTCTGAAATATTGGTCTGGAATATCCCCTTAAGACCAAAAAATGGGCCGGGTGTGGTGGCTCCCGCCTGTAATCCTAGCACTTTGGTGGGTTGCCTGAGCTCAGGAGTTTAAGACCAGCCTGGGCAACATGGTGAAACCCCATTTCTACTAAAAAAACAAAAACAAAAACAAAAACAAAAAAATACAAAAAATTAGCCAGGCATGTCGGCGTGCAGCTGTAGTCCCACCTACTCGGGAGGCTGAGGCAGGAGAATTGTTGAACCAGGGAGGCAGAGGTTGCAGTGAGCCGAGATCGTGCCACTGCACTGCAGTCTGGTCGACAGAGTGAGACTCTGTCTCAGGGGAAAACAAAAACAAAAACAAAAACTGGCTGGGTGCCGTGGCTCACGCCTGTAATTGCAGCACTTTGGGAGGCCGAGGCAGGCAGTCCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCTCGTCTCTACTAAAAATACAAAAACTAGCCAGTGTGGTGACACACACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTTGGAGGCAGAAGTTGCAGTGAGCCAAGACTGCATGACTGCACTCTAGCCTGGGCTGGAGTACAGTCAGACTCCATCTCAAAAACAAAACAAAACAAACAAACAAACAAACAAAAAACACTTTAATAAGGGCCTGAGGCCTAGATAGAGACAAAACCTTTTCTCAAAGAACTTTCTCTTCACTCCAAATACCACTCTATTTTTGTGCTCTCATTTTTCACTCATGTAACAAAAAGGTAAGTGCCATTCTTTTCTCCAGTGGCCCTTATTTTATCTATGATTTGGATCAAGTTCCTTCTCATCTCCCTTTTTTAAAATTTAATTTTCGTAAAATTCTTCATTCAGTTAAAAAAATTTTTTTAACCTCATTTTTTTATTTTACCCATCCCTTTTGAATTTTTGTCATTTTTCCTATCTTCTCCTTGATTGTACATTGCCTGCATTTATTAGTTCTCCTTATTAGTTCATTCTTTTAACCAACATTTATGGATTTTCTTATTTTAGGTTTAAAAGAATTAACAAGAATATATTGTCTCTTAAGAAACTTTTTGTTCTCTTCTGTGATTGGAACATGGCCACACATTTCTGCATACAGGGAACATTAAGAGAAGACCTAATAGGCTGCTTAGTTGAAAATCAGAGTAACAGGTGATAACAGTTTCTGGTCACAGTGAGGAGGAAGTGGCAGAAGAAAGGTTAGGGCTTATGAAGTACAACGAGAAGAACACAGTGTCATAAAAGACAAGCCCAGCCAGACGCGGTGGCTCATGCCTGTAATCACAGCATTTTAGAAGGCCGAGGCGGGTGAATCATCACCTGAGGTCAGGAGTTCAAAACCAGCCTGGACAACATGGCAAAATCCCATCTCTACTAAAAATACAAAAATGAGCTGGGCATGGGGGTGGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCTGAGATTGCGCCACTGCACTCCAACCTGGGCGACAGAGTGAGACTCCATCTCAAAATAAATAAATAAATAAATAAATAAAAAGACAAACTCTGACTTGTCTAGTTCCCCGTATTCTCCAGCTTTTCCTCTCTAATAATAATCATCAGCTACTGATTATTCAACACGTATCCTGTGTCAGGCACTTAATAGAAATAGCGTATTATTCCCAATCCTTGCAACAAACCTCTGCAAAGTGATGTTTTATTCCTTTTTATAATATGAAAAATTAAGAGCTCAGTCAAGCTCAGTAATTTTCCAATCACCTAAAAAGTAGTTTTAGTAAACAGAACTAGAGTCTGAAACTGCAGTTTGTCATCTTTCCATTGCAGTACATTACTGCTCATACTTTGTAACTAAACTGCCTTTCAATTCATTGAGTCACTGCTAGAGTACTTGCTGTCTCCCAAGAAAAACTGATAACAATTGTACTCGATCCTAAATATATACATTAGAAAAAAGAGTCACAGAGGAGTACTTATTCTTAGCTTGTGCCAGACTCCTTCTCCCTTGAAAAAATTTCTCAAACTATTTTTTTGTTGTTGTTAAGACAGGGTCAGTGGGGGGAGGGGGGAGGGATAGCATTAGGAGATACACCTAATGCTAAATGACGAGTTAATGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAACTGGCACATTGTGCACATGTACCCTAAAACTCAAAGTATTAAAAAAAAAAAAAAAAAAAAGACAGGGTCTCACTCTGTCACCCATGCTGGAGTGTGGTAGTGTGATCATGGCTCCCTGCAGCCTCATCTCCTAGGCTCAGGTGATGCTGCCACCTCAGCCTTCCAGGTAGCTAGGACCACAGGCATGCACCACCACTCCTGGCTAATTTTTTATAGAGATGGGTTTTTGCCATGTTGCCTAGGCTGGTCTCAAACTTCTGGGCTCAAGCAATCCATCTGCCTCAGCCTTTCCAAGTGCTGGGATTAAAGGTGTGAATCACTGTACCTGGCCTTCAAACTATTTTTCTGTCTGAACTATCACCCATAATTATCTCCTTTAACCTAAATGCAGCATACCCTGCTATTGAGATCCTAGTACTTTGGTAACTCTGGATCAGATTACTTCCCTCATATTAGACTGATATTCTGCTATTTCCCAGCATTCCTATTTTTAAGCTCTGAATTATATAAGACATTCATCATAGTACTTGGAAACTTGTAGGTATTTTATGACTTATTATTCTGTTATTGAGGTGATACCTGGATAATCATTTTTTATTGAGCTCCTCAGATGAATATGATCAAAATAAAACATATTTCTCATCACTTGACTCAACTTTTATTTCTTTTAAATTTCTACTTATTTCTTGCCCTTTTTTTCATATTGCTCATATTTGAGAATTTTCTAAGCCATTCACTTCTCATATGCTTTACTTCAAGATTTTCTATATCTATTTTAGAAGTTGTATTGCTTTTTGTACATACAACCGTATGATGTTTTTACCTTCTTATTTTTCAG
Seq C2 exon
ACATGCAGTCGAGGTGTCAGACCAAGAAGTTATTACCAAAAAATGGCATTTTTGAGAGAGAAATAGCCCAATTGGAAATAATGAGAATTTGTAAAAACCACAGCCTTGACTGTTTATGTTTTAGAGGTGACTGGGAAGGCAACACTCAGTTTCAAACACTTCAAGATAATCAAGAGGAATGCTTCAAGCAGGTGATACGCACCTGTGAAAAAAGGCCCACTTTTAACCAGCATACAGTGTTTAATCTACACCAGAGACTTAATACAGGAGACAAACTGAATGAATTTAAAGAACTGGGGAAAGCCTTTATTTCTGGTTCAGATCATACTCAACATCAGTTAATTCACACAAGTGAGAAATTCTGTGGAGATAAAGAATGTGGGAATACCTTTCTTCCTGATTCAGAAGTTATTCAATATCAGACAGTTCACACTGTTAAGAAAACATATGAATGTAAAGAATGTGGGAAGTCTTTTAGTTTACGTTCGAGTCTTACTGGTCATAAGAGAATTCATACCGGTGAGAAACCTTTTAAATGTAAGGATTGTGGGAAAGCCTTTAGATTTCATTCACAACTTAGTGTCCATAAGCGAATTCATACTGGTGAGAAATCTTATGAATGTAAGGAATGTGGGAAGGCCTTTAGTTGTGGCTCAGATCTTACTCGACATCAGAGAATTCATACTGGTGAAAAACCCTATGAATGTAATGAATGTAGAAAGGCCTTTAGTCAGCGATCACATCTTATTAAACATCAGAGAATTCACACTGGTGAAAAACCTTATGAATGTAAGGAGTGTGGGAAAGCTTTTACTCGTGGATCACACCTAACTCAGCATCAGAGAATTCATACTGGTGAGAAATCTCATGAGTGTAAGGAATGTGGAAAAGCCTTTATTCGTGGTTCAAATCTTGCTCAACATCAGAATGTTCATGTTGGTAGGAAACCTTATAAATGTGAGAAATGTGGGAAAGCCTATATTTGGAGCTCACACCTTGCTCGACATCAGCGAATTCATACTGGCAGGAAACCTTATGAATGTAAGCAATGCGGGAAGACTTTTACTTGGGCTTCGTATCTTGCTCAACATGAGAAAATTCACAATGAGAGGAAATCCTATGAATGTAAGGAATGTGGAAAGACCTTTCTTCATGGCTCAGAGTTTAATCGACATCAGAAAATTCATACTGGTGAGAGAAACTATGAATGTAAGGAATGTGGAAAGACCTTTTTTCGTGGTTCAGAACTTAATCGACACCAGAAAATTCATACTGGAAAGAGGCCATATGAATGTGAAGAATGTGGAAAAGCCTTTCTCTGGGGTTCACAACTTACTCGACATCAGAGAATGCATACTGGTGAGGAACCTTACGTATGTAAAGAATGTGGGAAATCTTTTATCTGGGGTTCACAGCTTACACGACATAAGAAAATTCATACTGATGCAGAACCTTATGGATGCAAGAAAAGTAGCCACATCTTTAGTCACCATTCATATTTTACTGAACAAAAAATTCATAATAGTGCAAATCTCTGTGAATGGACAGACTATGGGAACACCTTTAGTCATGAGTCAAACTTTGCTCAACACCAGAATATTTACACTTTTGAGAAATCCTATGAATTTAAAGATTTTGAGAAAGCATTTTCTTCAAGCTCTCACTTCATTTCACTCTTGTGAAATATTATATAAAAGTGTAGGAAGGGCTTTATTCATGACTCATTAATTGATGTCATTTATTTTTTTCTCTTGAGGAACACCACAAATGTAAGTAATATTGGAAGGCATTTTAACAGAGCACACATCCAGCAGCAGCAGCAGCAGCAGCAGCAGAGAATTCATCATGCAATCAATATAGGAAAGAAATTACTGATCAGTTATCAATTGCAGAATATCAGGGTAAAATTTTATGAGATAGCATGAATTCTTTTTGAATCATTCTCAAAACATTCTCATCAGAGATGTTGCATAAAGAATTTATATATAATTTGGCCAAGCATGGTGGCTCACACCTGTTATCCTAGCACTTTGGGAAACAGAGGTGGGTGGATCACCTGAGGTCAGGGGTTCGAGACCAGCCTGACCAACATGGTGAAACCCTGTCTCTACTAAATATACAAAAATTAGCCGGGCGTGGTAGCACACGCCTGTAGTCCCAGCTACTCGGGAGGCCGAGGCATGAGAATTCCTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCCAAGATCACATCACTGCACTCCAGCCTGGGTGATAGAACAAGACTCCATCTCAAAAACAAAAACCCACAAGAATTTATATATAATTCATTTTGGAAATCTTTCATCATTAGCAAAATTCTGTTGTATTTCCACAAAAATCATGTAATTAATCTAGAAAAGCCTTGAACTATGTCATACAATTTATTTGGCATGTCTTGTTTCAATACATCCTGCCTCTATTTTTTTTTTTTGGAAAGTATCTTAAATCTATGTCTGTTTAATCGTATTCATTAGATTATAAGGGTTGAATGATTTGAGATTTACATGACTTAGTGACTGTCATTTGTATTGGTATTAAGCCATTTTATGAGAGGAGGACTTTTAAGACTATAATGATTATAGACAAATATGTCATCTCTATTTATGTCTTACTGAACATCAGAATGTTAATTCTGAAAAAAAATCAGTAAAATACAATGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197863-ZNF790:NM_206894:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.5),PF097235=Zn-ribbon_8=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=4.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)