HsaINT0188416 @ hg38
Intron Retention
Gene
ENSG00000197863 | ZNF790
Description
zinc finger protein 790 [Source:HGNC Symbol;Acc:HGNC:33114]
Coordinates
chr19:36817428-36823380:-
Coord C1 exon
chr19:36823285-36823380
Coord A exon
chr19:36820115-36823284
Coord C2 exon
chr19:36817428-36820114
Length
3170 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTACCTTCTTATTTTTCAGACA
3' ss Score
11.57
Exon sequences
Seq C1 exon
GTTTTTGCATTTATCAGCCAGAAGCGTTCTCTTTATTGGAGAAAGGGAAAGAGCCCTGGAAGATTTTGAGGGATGAGACAAGAGGACCTTGCCCAG
Seq A exon
GTGAGTGAGGGCTGAACACGCACAAGGAGGCCATTGTTGTGGATAACAGCTCAGCTGCACAGTGAGGCAGCAACACCTCTGAAATATTGGTCTGGAATATCCCCTTAAGACCAAAAAATGGGCCGGGTGTGGTGGCTCCCGCCTGTAATCCTAGCACTTTGGTGGGTTGCCTGAGCTCAGGAGTTTAAGACCAGCCTGGGCAACATGGTGAAACCCCATTTCTACTAAAAAAACAAAAACAAAAACAAAAACAAAAAAATACAAAAAATTAGCCAGGCATGTCGGCGTGCAGCTGTAGTCCCACCTACTCGGGAGGCTGAGGCAGGAGAATTGTTGAACCAGGGAGGCAGAGGTTGCAGTGAGCCGAGATCGTGCCACTGCACTGCAGTCTGGTCGACAGAGTGAGACTCTGTCTCAGGGGAAAACAAAAACAAAAACAAAAACTGGCTGGGTGCCGTGGCTCACGCCTGTAATTGCAGCACTTTGGGAGGCCGAGGCAGGCAGTCCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCTCGTCTCTACTAAAAATACAAAAACTAGCCAGTGTGGTGACACACACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTTGGAGGCAGAAGTTGCAGTGAGCCAAGACTGCATGACTGCACTCTAGCCTGGGCTGGAGTACAGTCAGACTCCATCTCAAAAACAAAACAAAACAAACAAACAAACAAACAAAAAACACTTTAATAAGGGCCTGAGGCCTAGATAGAGACAAAACCTTTTCTCAAAGAACTTTCTCTTCACTCCAAATACCACTCTATTTTTGTGCTCTCATTTTTCACTCATGTAACAAAAAGGTAAGTGCCATTCTTTTCTCCAGTGGCCCTTATTTTATCTATGATTTGGATCAAGTTCCTTCTCATCTCCCTTTTTTAAAATTTAATTTTCGTAAAATTCTTCATTCAGTTAAAAAAATTTTTTTAACCTCATTTTTTTATTTTACCCATCCCTTTTGAATTTTTGTCATTTTTCCTATCTTCTCCTTGATTGTACATTGCCTGCATTTATTAGTTCTCCTTATTAGTTCATTCTTTTAACCAACATTTATGGATTTTCTTATTTTAGGTTTAAAAGAATTAACAAGAATATATTGTCTCTTAAGAAACTTTTTGTTCTCTTCTGTGATTGGAACATGGCCACACATTTCTGCATACAGGGAACATTAAGAGAAGACCTAATAGGCTGCTTAGTTGAAAATCAGAGTAACAGGTGATAACAGTTTCTGGTCACAGTGAGGAGGAAGTGGCAGAAGAAAGGTTAGGGCTTATGAAGTACAACGAGAAGAACACAGTGTCATAAAAGACAAGCCCAGCCAGACGCGGTGGCTCATGCCTGTAATCACAGCATTTTAGAAGGCCGAGGCGGGTGAATCATCACCTGAGGTCAGGAGTTCAAAACCAGCCTGGACAACATGGCAAAATCCCATCTCTACTAAAAATACAAAAATGAGCTGGGCATGGGGGTGGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCTGAGATTGCGCCACTGCACTCCAACCTGGGCGACAGAGTGAGACTCCATCTCAAAATAAATAAATAAATAAATAAATAAAAAGACAAACTCTGACTTGTCTAGTTCCCCGTATTCTCCAGCTTTTCCTCTCTAATAATAATCATCAGCTACTGATTATTCAACACGTATCCTGTGTCAGGCACTTAATAGAAATAGCGTATTATTCCCAATCCTTGCAACAAACCTCTGCAAAGTGATGTTTTATTCCTTTTTATAATATGAAAAATTAAGAGCTCAGTCAAGCTCAGTAATTTTCCAATCACCTAAAAAGTAGTTTTAGTAAACAGAACTAGAGTCTGAAACTGCAGTTTGTCATCTTTCCATTGCAGTACATTACTGCTCATACTTTGTAACTAAACTGCCTTTCAATTCATTGAGTCACTGCTAGAGTACTTGCTGTCTCCCAAGAAAAACTGATAACAATTGTACTCGATCCTAAATATATACATTAGAAAAAAGAGTCACAGAGGAGTACTTATTCTTAGCTTGTGCCAGACTCCTTCTCCCTTGAAAAAATTTCTCAAACTATTTTTTTGTTGTTGTTAAGACAGGGTCAGTGGGGGGAGGGGGGAGGGATAGCATTAGGAGATACACCTAATGCTAAATGACGAGTTAATGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAACTGGCACATTGTGCACATGTACCCTAAAACTCAAAGTATTAAAAAAAAAAAAAAAAAAAAGACAGGGTCTCACTCTGTCACCCATGCTGGAGTGTGGTAGTGTGATCATGGCTCCCTGCAGCCTCATCTCCTAGGCTCAGGTGATGCTGCCACCTCAGCCTTCCAGGTAGCTAGGACCACAGGCATGCACCACCACTCCTGGCTAATTTTTTATAGAGATGGGTTTTTGCCATGTTGCCTAGGCTGGTCTCAAACTTCTGGGCTCAAGCAATCCATCTGCCTCAGCCTTTCCAAGTGCTGGGATTAAAGGTGTGAATCACTGTACCTGGCCTTCAAACTATTTTTCTGTCTGAACTATCACCCATAATTATCTCCTTTAACCTAAATGCAGCATACCCTGCTATTGAGATCCTAGTACTTTGGTAACTCTGGATCAGATTACTTCCCTCATATTAGACTGATATTCTGCTATTTCCCAGCATTCCTATTTTTAAGCTCTGAATTATATAAGACATTCATCATAGTACTTGGAAACTTGTAGGTATTTTATGACTTATTATTCTGTTATTGAGGTGATACCTGGATAATCATTTTTTATTGAGCTCCTCAGATGAATATGATCAAAATAAAACATATTTCTCATCACTTGACTCAACTTTTATTTCTTTTAAATTTCTACTTATTTCTTGCCCTTTTTTTCATATTGCTCATATTTGAGAATTTTCTAAGCCATTCACTTCTCATATGCTTTACTTCAAGATTTTCTATATCTATTTTAGAAGTTGTATTGCTTTTTGTACATACAACCGTATGATGTTTTTACCTTCTTATTTTTCAG
Seq C2 exon
ACATGCAGTCGAGGTGTCAGACCAAGAAGTTATTACCAAAAAATGGCATTTTTGAGAGAGAAATAGCCCAATTGGAAATAATGAGAATTTGTAAAAACCACAGCCTTGACTGTTTATGTTTTAGAGGTGACTGGGAAGGCAACACTCAGTTTCAAACACTTCAAGATAATCAAGAGGAATGCTTCAAGCAGGTGATACGCACCTGTGAAAAAAGGCCCACTTTTAACCAGCATACAGTGTTTAATCTACACCAGAGACTTAATACAGGAGACAAACTGAATGAATTTAAAGAACTGGGGAAAGCCTTTATTTCTGGTTCAGATCATACTCAACATCAGTTAATTCACACAAGTGAGAAATTCTGTGGAGATAAAGAATGTGGGAATACCTTTCTTCCTGATTCAGAAGTTATTCAATATCAGACAGTTCACACTGTTAAGAAAACATATGAATGTAAAGAATGTGGGAAGTCTTTTAGTTTACGTTCGAGTCTTACTGGTCATAAGAGAATTCATACCGGTGAGAAACCTTTTAAATGTAAGGATTGTGGGAAAGCCTTTAGATTTCATTCACAACTTAGTGTCCATAAGCGAATTCATACTGGTGAGAAATCTTATGAATGTAAGGAATGTGGGAAGGCCTTTAGTTGTGGCTCAGATCTTACTCGACATCAGAGAATTCATACTGGTGAAAAACCCTATGAATGTAATGAATGTAGAAAGGCCTTTAGTCAGCGATCACATCTTATTAAACATCAGAGAATTCACACTGGTGAAAAACCTTATGAATGTAAGGAGTGTGGGAAAGCTTTTACTCGTGGATCACACCTAACTCAGCATCAGAGAATTCATACTGGTGAGAAATCTCATGAGTGTAAGGAATGTGGAAAAGCCTTTATTCGTGGTTCAAATCTTGCTCAACATCAGAATGTTCATGTTGGTAGGAAACCTTATAAATGTGAGAAATGTGGGAAAGCCTATATTTGGAGCTCACACCTTGCTCGACATCAGCGAATTCATACTGGCAGGAAACCTTATGAATGTAAGCAATGCGGGAAGACTTTTACTTGGGCTTCGTATCTTGCTCAACATGAGAAAATTCACAATGAGAGGAAATCCTATGAATGTAAGGAATGTGGAAAGACCTTTCTTCATGGCTCAGAGTTTAATCGACATCAGAAAATTCATACTGGTGAGAGAAACTATGAATGTAAGGAATGTGGAAAGACCTTTTTTCGTGGTTCAGAACTTAATCGACACCAGAAAATTCATACTGGAAAGAGGCCATATGAATGTGAAGAATGTGGAAAAGCCTTTCTCTGGGGTTCACAACTTACTCGACATCAGAGAATGCATACTGGTGAGGAACCTTACGTATGTAAAGAATGTGGGAAATCTTTTATCTGGGGTTCACAGCTTACACGACATAAGAAAATTCATACTGATGCAGAACCTTATGGATGCAAGAAAAGTAGCCACATCTTTAGTCACCATTCATATTTTACTGAACAAAAAATTCATAATAGTGCAAATCTCTGTGAATGGACAGACTATGGGAACACCTTTAGTCATGAGTCAAACTTTGCTCAACACCAGAATATTTACACTTTTGAGAAATCCTATGAATTTAAAGATTTTGAGAAAGCATTTTCTTCAAGCTCTCACTTCATTTCACTCTTGTGAAATATTATATAAAAGTGTAGGAAGGGCTTTATTCATGACTCATTAATTGATGTCATTTATTTTTTTCTCTTGAGGAACACCACAAATGTAAGTAATATTGGAAGGCATTTTAACAGAGCACACATCCAGCAGCAGCAGCAGCAGCAGCAGCAGAGAATTCATCATGCAATCAATATAGGAAAGAAATTACTGATCAGTTATCAATTGCAGAATATCAGGGTAAAATTTTATGAGATAGCATGAATTCTTTTTGAATCATTCTCAAAACATTCTCATCAGAGATGTTGCATAAAGAATTTATATATAATTTGGCCAAGCATGGTGGCTCACACCTGTTATCCTAGCACTTTGGGAAACAGAGGTGGGTGGATCACCTGAGGTCAGGGGTTCGAGACCAGCCTGACCAACATGGTGAAACCCTGTCTCTACTAAATATACAAAAATTAGCCGGGCGTGGTAGCACACGCCTGTAGTCCCAGCTACTCGGGAGGCCGAGGCATGAGAATTCCTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCCAAGATCACATCACTGCACTCCAGCCTGGGTGATAGAACAAGACTCCATCTCAAAAACAAAAACCCACAAGAATTTATATATAATTCATTTTGGAAATCTTTCATCATTAGCAAAATTCTGTTGTATTTCCACAAAAATCATGTAATTAATCTAGAAAAGCCTTGAACTATGTCATACAATTTATTTGGCATGTCTTGTTTCAATACATCCTGCCTCTATTTTTTTTTTTTGGAAAGTATCTTAAATCTATGTCTGTTTAATCGTATTCATTAGATTATAAGGGTTGAATGATTTGAGATTTACATGACTTAGTGACTGTCATTTGTATTGGTATTAAGCCATTTTATGAGAGGAGGACTTTTAAGACTATAATGATTATAGACAAATATGTCATCTCTATTTATGTCTTACTGAACATCAGAATGTTAATTCTGAAAAAAAATCAGTAAAATACAATGAAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197863:ENST00000356725:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains