Special

MmuINT0179884 @ mm9

Intron Retention

Gene
ENSMUSG00000011427 | Zfp790
Description
zinc finger protein 790 [Source:MGI Symbol;Acc:MGI:1923431]
Coordinates
chr7:30610711-30617061:+
Coord C1 exon
chr7:30610711-30610806
Coord A exon
chr7:30610807-30613139
Coord C2 exon
chr7:30613140-30617061
Length
2333 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TGTGCGTTCTCACCTTTCAGATA
3' ss Score
12.34
Exon sequences
Seq C1 exon
GGCTTTGCATTTATCAACCGCATGGGTTCCCTGTGCCAGAGAAAGAGCAAGATGCCTGCATGGATTTGGGCAATGAGCCTAGCAGATTTTGCCCAG
Seq A exon
GTGAGTGAGGCTGCTCGGTCATCCGGGAGTCTGTCCGTCCAGTGAGTCAGCAGCACCTCTCATCCACTGGTCCAGACCCTCGCCCTGGGGAGTGGCCTGTGGCAAAGGCTAATGAGTGACTGGCCTTTCCTGCAGCGTCTTCACTCCACAGTCATCCTGTTTGTCCCATATGAGACAAAAAAGGAAAGTGCCGTTCTCTCTCCTGTGGTCATTGGTGATCATCGATAGGCTCTTTCTCTCCCTTGGTGACAAAGGTATAGGCCAGATCAGACCAGATTAAAAGTAGGTAATGGCAGGTTTATTACGAGGCAGCTCTCGGGTGGATTCACCGATCCCTCAGGTGGTCAGTGAAGTCACACATCCAGGCTAAAGCAGGGGTGTTTTATGTGTCTTGGGCACAGGTTGATGGTATGTCAGCTAACACCTGGGATAGTGTCCATTCATGGTCAAAACCTGAGCCCCTGGGGGGTGGGGAAATGACATGTTAGCCCGGAGTGTCTTCAAGCCGGCCGGGGGATGGGGGAAGGAGGGCAGATGGGAGTTTCCCAGTTGGTGCAGGCTAACAGTCATGATTTTGAGAATGATGGCGATCAAACGCCCGCCCTCCCTTGCTGTCTTCTTACCGTTTTCCATTTGGGTGTTTATAAAGTTTCCTAAAAATTGTAAACGCTCGCAGCACTCGGGAGGCAAAGGCAGGCGGATTTCTGAGTTCAAGGCCAGTCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTTCCTCAAAAAAAAAAAAAGAAAAGTAAATGCAGTCATTAATTTTAGCTACCGTTAAAACTTTCCCTTCCTCCCGTGGACCAGCCTTCTTGGATCACCCTGCTTCTTGCTCCTTCCTTGTGTTTCCTGAATTCAGGAGGCATTCTTTTTTTTTTTTATAAGATTGATTGATTGATTGATTGATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCGTCAGATCTTGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCAGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCCCAGGAAGCATTCTTTTAACCCACAGTTACCAGCTTTCTAATTTCATTTTGGTTTGCTAGTGTTAAGAAAATATGTATTCGGAAACCTTGTATTCTTTTCTGTGGTAAGAATGTACCCAGAAATGTTTGCATAAGTCATCTGTTAAGAGTAACAAGTAAAAACAGTTTGGGCTACTTAAGAGAAACTAAGTGTAAAGAGGTCAGGGCCAAAGAGGGACAACCAGGGTCCATGGCAGGGTCGAGCCCTGGCTCATCCACTCCCCTGTATTTCTCCATTTTCTCCTCTGCGGAAGAGGATGGCCTTTGTCGGTCATTCATCCTCCATGCCAGGCGCTCTGGAGGAATTATGCACTAGGGACGAGCGAGATGGTCAGGCAGGGGAAAGTGTTTCTTGCTATGTATGTTCTTCTGAGGCCCTGAGTTCAGTCCCACAGTGGCAGAACTGGCTTCTGAAAGTTGTAGTATGATTTCTGCATGCTCACGCAGTGCGCGTGCGCGCACACATACACACAATGACGTCCATATGTCCACTGTGGCATATGCATGCTCACAGTCTCTCTCTCTCTCTCTCTCTCTCCACACACACACACACACTAATAATAATAATAATAATAATAATAAATAATAAATTAGTCTTTGACTGGGCCAGCTTCAATATGCTTTTGTCTTCTATGGTATAAAAAGTCATAGAGGCTGCTCTTAAAGAGGACCCAGGTTTGCTTTCCAGCACCCATGTGGTGGCTCACAGCTGCCTAACTCCAGTCCTAGGGGGTTTCTGGCTCTTCTGGTATTCTTGGGTACAAGCACACACATGGTACACAGACATACATAACATGCAGGCAAACACCCGTACACATGAAATACACGCATACATTTTTAAAAGCCATGAAGGAAGCAGCCTGTATGATCATTCACACGGCAGTGGAGGAGATTAACTGTGGGCCGTGCATGTTACATTGTGGTTACTGGATTAGCCTATGGGTGCTTTTGGATTACCTGGGTTTATAAAATGTTAGTCCATTCTGCACCCTCCTACCCTACCTCGACACCTTTTTCAGTTAGCTGTCTGAAATTTCTGTTTATTTTTTGTCCTTTTTAATTTGGGGTTTTGTGGTTATTGTTTTGTTAAGACATTCACTTCTCATGAGCTTCACTTTAACCGTAGCTTTTGGTAGCTTATGGATAGTAAAACAGTGTGCATGTGCGTTCTCACCTTTCAG
Seq C2 exon
ATACAGATTCCCGGTGGCAGATGAAGAAAGCCCTACGGACAAACAGCACGTGCGCAACTCGGTTGTCCCACTGGGAGGGAATGGGAATGGAGCCAAAGCACGGGCTTGCAGCCTCGTGTCCTGCAGCCGACTGGGAAGGCAAAGGTCAGGAGCCACCACAAAGTGAGAATCAAGAGGAAACGCTCCAGCAAATGACACTCGCTTGTGACAAACTGCCCCTTCTGAATCTGCTCACAGCTCTTCAGTGTCCAAGACTGAAGCTAGCAGAGAAAACAAAGGAAGTCAAATCGGAAAAATCCTTTAGTTTTGCACCAGAGCCCGCTCAACTTCAGCTCATTCACACAGGTGAGAAATTTGAGGAAGATAAAAAACGCGGAAAGACCTTCCCTCCTGGCCCTAAGCTTACTCGCTACCGAGCAGTTCAGGATGGCAAGAAGGCATTTCAGTGTGACGAGTGTGGCAAGGCTTTCAGCTTCCGTTCTAGCCTCACTGGTCACAAGAGAATTCATACTGGGGAGAAGCCGTTCACGTGTAAGGAGTGTGGGAAGGCCTTCAGATTCCACTCACTGCTCAGTGTCCACGTTCGGACTCACACTGGCGAGAAGTCTTACGAGTGTAAGGCATGTGGAAAGTTCTTTAACTACAGCTCAGACCTGACTCGACATCACCGGATCCACACGGGAGAAAAGCCCTATCAGTGTAGGGAATGTGGGAAAGCCTTCAGCTGTGGCTCAGACCTGACTCGGCACGAGAGGATCCACACTGGCGAGAAGCCCTACGAGTGTAATGAGTGTGGAAAGGCCTTTATCCAGCAGTCACATCTCATTAAACATCAGAGAATCCACACAGGTGAAAAACCTTACGTATGCAAGGAGTGTGGGAAAGCCTTCACGTGCGGGTCACAATTAAGTCAACATAGGAAGATCCATACTGGCGATAAATTGCATAAATGTAAAGAATGTAAAAACTCCTTTAGTTTCGCCCTAGATCATACCCAGAGGCAGTTAATTTACATTGGTGAGAAGTTCTTTGAAGATAAGGAGAACGGGGAGACCTTCTTTCCAGGCGCAGAGTTTCCGCAGTGTGAGACAGTTCACACCGGTAAGAAGCTGTACGAGTGTAAAGAGTGTGGCAAGGCTTTTAGTCTGCGCTCCATCGTTAGTAGTCTTAAAAAAATTCATAACAGGGAAAAGCTTTTTAAATGTAAGGACTGTGAAAAGGCCTTCCGTTGCCCCTCAGACCTCTCTCGACATCAGAAGATTCACACGGGCGAGAAGCCCTACAAGTGTAAGGAATGTGGGAAGGGCTTTATTTGCCGATCCGACCTGGGCCGGCATCAGAGAGTTCACACTGGTGTGAAGCCGTACGTGTGTAAGGAGTGTGGGAAAGCTTTCACTCGAGGGGCACACCTGACTCAGCATCAGAAAATTCATAGTAAGAAATCACACGAATTCAATGAAGGAGAGAAGGCCTTTAGTTCTGGTTTAGAAAACACTCCGCACTCCTTGATCCCTACGGGCGAGAAACTCTGGGAACGTAAGGAATACGGAGAGGCCGTCCTTCATGACCCAGAGCGGACTCAACTCCAGGCTGCTAAGACAACGTATGACTGTAAGGAGAAGGGCAAGGACTTTAGCTGGCATTCACATGATACAGACCTCAAGGCAGTTCATATTCGGGAGAAACGTTTTCAATGCAAGGAATGCCCAAAGGCCTTTAGATACAGCTCAGAACTGACCCGACATCAGAGACTCCATACTGGAGAAAAGCCGTATAAATGTCAGGAGTGCTGGAAGGCCTTTGCTTCTGCGTCAGACCTGGCCCGGCACCAGAGGATTCACACTGGTGAGCGGCCCTACGAGTGCAATGAGTGTGGGAAAGCCTTTATTCAACAGTCACACCTCATTAAACATCAGAGAGTTCACAGTGCCGAGCAGCCCAAGGATGTGATGAGCGCAGAGAAGCCATCGCTTGGCAGTCCGATGCTATTGAACATGAGAGAGTTCACACTGGTCAACAATCTTATAAATTTAAGGAGTGTTGGAAAGATTCTGCTCATGGCTCAGCTCAATCCGTGTCAGAAGATTTATACTGATAAGAAATTAAGTTAAGGTGGAGGGCTTGGAAAAGCCTATTTCTGGGTCTCAAATCTTACCCAGCACTAGAGTGTCCACATTGGTGGGAAATCTACAGCAGATCTGGGGAAGCCTTTAGTTGTAACTCAAGTCTCTGTCCATGTCAGTCCGTGGGGTAGAGAATCCTACAGTGTAAACAATGTGGAGGCTTTCATGGGTTCACATCTTGCTCAAAGGGAGAAAATTCATGAGAGGAAACTGGATATAAGGAATATGGAAAGACCTTTCTTCATGGTTCAAAATTTAATAGACACCTGGAAAATCATGCTGACTAAGAGAACTGAATTCAAGGAATTTGGAAACATTTATTCATGATTCTGCACTTAACTGATAGTAAATTCTCAAAAGGGACCTGAGAGAATGTGGAAATGCCCTTCAGGTTTGCAGCTGTGGGGAACAGGGCTTGGCAAGCAACCTGGCTATCCCAGAGAGATGGAAAAGTTTTCATCTTGGACTTTCCTCTCATGACAAGAAGTTCATGCTGGCACCGAGCCCCACAAATGTATGAAGTGATTTTAGTTACCATGGCAGCTTGGGTCAACACCTGGATATATATACTTTTTCCTGTGGTATGAAACCCTGAGCTGTGTGTGCTGAACACACTGTCTTGTTTCTCAGCTGCATCCCCAGCCCTCACGTTTGAGGAAGCCCATGAAGATAAATATGTTGAAATGTTTTTCTAAGAGCTTACACTTTTCACTGCTGTGTTATCTTGCGACACAAAAATAAGAAAAGCTAATTTATTTCTAACTCATTGAGTTAATTTCTTTTTTTTTTCCTTTTTTATTTTTCTTTTCTTTCTTTTTTTTTTAACGAGCTTTTGGCAAAATAACGTGTCTGTTGTCCAAAGTCATGATATGATTGCTGTTAGTTTAGGAAAAACTTTACTGGTGGGTTATTTATGTATGGTGAGGATTCCTTATAAGAGAAGTGACATATGGCTCTATCGTAGAGTATTTGCAGTGACATGTAAAAGTGCAACATATGTGAGACATGATTTTTATATGTGCATTACATACTTTCTCGGGAAACTTGGAAGTGCTTGTTTTTTAATACAACATAAAAAGTTCGAAAGAATTTTTTAAAAATTCAGAATTGCATTTTAAAAGTTCTGTGAGGGCTGGAGAGATGGTTCAGTTGGTAGAGCACTTGTTTGGCATGCACGAAGCCCTGGGTCTGTTCTCCAGCTGCATAACCAGGCTTTGTGGTATATGCCGCAGATTCTAGTACTCAGAAGTTCGGGGTCATGATTGGACTACCTAGTGAATTCAAGGCCAGCCAGGAACTCATGGGACTGTCTCAAAGGAAAAAGAAAATCATGTCCCACTAAGGTTACCAGAGATCCATAATATATATTTATATAACGTGTATATCCTGTGGGAGAGTAGAAAATCCTGTGGAGAATCTGTAGGCTTACTTAGCATAATTCTTGTATTGGAAAAGTTTCTGTTATAAAGTAAATGAAAAGTTACAGAAGAGGTGAGCCTAACATTACATACAGAGATGGTGCTGCTGGCTTCTTGTTTGAGTGTTTCGTAGGGTGGATGGCAGTTCTGAATGGTAGAGATGTGTGTTTAGTTCAGTCCTGAGTGTCATACAAGTGCAGTCCCTGGTACCTCTCTTAGTACTATGTGTTACGCAGTTGTGGGTAAGTGTGCATACAGGGCAGTTAGGTGTGTCTCCTGTGCATGTCATTCTGAAATTATTGTCATCTATGAACTTTACCACATGGGAATTTCATCATATATCTCTACTGTAATAAAGCCATATTCATTCATGCTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011427-Zfp790:NM_146185:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
Alternative protein isoforms





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.113 A=NA C2=0.164
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0135222=KRAB=PD(0.1=0.0)

							
A:
NA

							
C2:
PF134651=zf-H2C2_2=WD(100=3.6),PF054957=zf-CHY=WD(100=11.1),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000032796





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000096198
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr19:36820115-36823284 
HsaINT0188416
(ZNF790)
Human
(hg19)
chr19:37311017-37314186 
ALTERNATIVE
HsaINT0188416
(ZNF790)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr18:47702850-47702862 
BtaINT0165475
(ZNF420)
Chicken
(galGal4)
chr18:31475-31583 
ALTERNATIVE
GgaINT1030522
(ZNF302)
Chicken
(galGal3)
chrUn_random:28965509-28965614 
LOW PSI
GgaINT0003356
([1])
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"