RnoINT0168704 @ rn6
Intron Retention
Gene
ENSRNOG00000029043 | Zfp84
Description
zinc finger protein 84 [Source:RGD Symbol;Acc:1309815]
Coordinates
chr1:87704421-87710500:+
Coord C1 exon
chr1:87704421-87704939
Coord A exon
chr1:87704940-87707439
Coord C2 exon
chr1:87707440-87710500
Length
2500 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
GTGCACTCTCATGTTTTCAGATA
3' ss Score
8.65
Exon sequences
Seq C1 exon
GTAATGACGTTCAGAGATGTGGCCGTAGACTTCTCTCCCGAGGAGTGGGCGTGTCTGAGCCTGGAACAGAGGAGTCTATACAGAGACGTGATGCTGGAGAACTACAGCCACCTCGTCTCCGTGGGTAAGACTCGACCCTAGACATTCCGGGCTTCCTTATTGGCAGCCACTGACTTTCTTTTTTATAAGAAATGTCAGGGGGTTTTCTGACCTGCGTTTATTCTGGAAAACGGCCCGTGTTTTCTGCAGAGATGGTGTCGTCACTGGGGAAGCCCGTGTTCACCGTCCTCCCAGAATGCGTTGTGCTTTTTCTTTGTCCTTCCTGTCCTTGCTGCACTTCCTTTGTTACCAGGGCACCAGCTCAAACTTTTTGGCTTCTCTTCCGTGTGGTCACTACCTGCCTATATTTTATCTTACACGCAGGACTTTGCATTTATCAACCGCATGTGTTCCCTGTGTTGGAAAAAGAACAAGATGCCTGCGTGGATTTGAGCAATGAGACCAGCAGATTTCTCCCGG
Seq A exon
GTGAGTGAAGTCCGCTGGGGCCGTCATCCGGTAGTCTGGCGGTGGAGTGAGTCAGCAGCACCTCTCACACACTGCCCCAGACCCTCTCCCTGGGGAATGCCCGTGGCAAAAGCTAACACGCGGCTGGCCTTTCCTGCACCGCCCGTACTCAGCTCGGAACCTCCTGCCGTTCTTTCTCTCCAGTGGTCATTGACAGGCTCTTCCTGTCCCTTGCTGACACAGATAGAGGCCAGATCAGACTAGATTAAAAGTAGATAAAGGCAGGTTTATTAGGAAGCAGCCTTCCGGTGGATTCATCGATCTCATGGGTGGGTAGTGAAGTCACACATCCAGGCTAAAACGGGTGTTTAATGTGTCTGAGTGCAGGGTAATGATATGTCTGCTAAGACTTGGGATGGTGTCCCATTCATAATCAAAAACTGAGCCCCTGGGAGGCCACCCTTGGGTAGGTTGCTGGAAAAGAGGAGATGAGGAGGAATGACATGTTAGCCTGGAGTTTCTCCAAGCAGGTGGGGGAGTTTTCTCTGTGCAAGGGGCCGGTGTTTGGGGAAGGAAGGCTGACGGGGTTTCTCAGCCAGTACAGGGGCGAGCAGGGGTTCCAGGCTAATAGTCATGATTTTACGAATGATGGAGATCAGACGCCTGCCCCTCCCTTGCTGTTGTCTTACCGTTTTCCATTTGGGTGTTTATAAAGTTTCCTAAAATTGTAAACACATCTTTTATTTTAGCCACCTTTAAACTTCCTCCCGTGGGCCAGCACATGCAGCCTTCTTGAATTACCCCACTTCTTGCTCCTTCCTTGTGTTTCCTGAATTCATGAGGCATTCTTTTAACCTACAGTTACCAGCTTTCTAATTTCATTTTGACTTGCTAGTGTTAAGAAAGTATGCATTAAGAAACCTTGTATTGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGCCCTGAGTTCAAGTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCCGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCATATAAAGTAATAAATAAAATAAATCTTTAAAAAAAAAAAGAAAGAAAGAAAAGAAACCTTGTATTCTTTTCTGTGGCAGGAATGTACCCAGAAATGTTTGGGAAGAAGGTCATCTGTTAACAAGTAAAACCAGTCTGGACTACTTAGGGGAAACTACTTGCAAAGAGGTCAGGGCCAAAGGGGGACAACCAGGAGAGATGGCAGGGGTGAGCCCTGGCTGGCCTATGTACTTCTCTGTGTCTCTCCATTTTCTCCCCTGCCAGAGAGGATGGCCTTTGTCAGTTGTTCAGCACGACCTGCCAGGTGCTTTGTAGTGCTAGGAACAAGCAAGATGGCCAAGCAGGTGAAAGTGTTTCTTGCTGTATTCTTCTAAGGCCCCGAGTTCAGTCCCATGGTGGCAGAACTGGCTTCTGAGAGTTGTAGTATGACTTCTGCACATTCATGCGGTCTGTGTGCACGCATCCGCACACGCGCATTCGAGCACGCGTGCGCGCGCGCGCGCTCACACACACACACACACACACACACACACACACACACAGTGACTTCCACATGTCTGCTATGTCGTGTGCTTGCCCAGAGTCACACACACAATGACTTCCAGTTGTTCACTGTGGCATGTGCATGCTCACAGTCTGTCTGTCTCTCTGTCTCTCTTCACATAATAATAATAATGATAATAATAATAATTTTATTATTTATATATTTAATTAAATAATTATATATTTATTTAAATAATTATATATATATTTATTATTATTATTATTATTATTATTATTATTATTATTATTAGTCTTTGACTGAGGCAGCCTGTATATGCCTTTGTCTTCTGTCGTACAAAAAGCCGTCCAGGGGCTGGAGAGACGGTTCAGTTGTTAAGAGCACTGGCTGCTCTTCCAGAGGTCCCAGGTTTGCTTTCCAGCCCCATGTGGTGGCTCACAGCTGCCTAACTCCTGGAGGGTTTGTTTCTGGCACTTCCAGTGTCCTTGGGTACAAGCACACACACGGTACACAGACATACAGGCAGGCAGGCAAACACCCACACACAGAAAATAGATGCATGCATTTTTAAAAGCCATGAAGGAAGCAGCCCATGGAATCGTTAACATGGCGGTGCAAGAGACTAACCTGGGCTGGGCTACGCTGTTGTTACTGGATCAACCCATGTGTGCTTTTTGGTCCCTGGGTTTATAAAATGTTAGTCTGTTCTAAGCAAACTGAGCCCCCCACCCCACCCCACCTTGACACCTTTTTAAATATTTCTCTGAAGTCTCAGTTTATTTTTGCCCTTTTTAATATTGTCCAGATTTGGGGTTTTGTTGTTAATGTTTTTCTAAGACATTCACTTCATGTGTGATTTACTTTAACCTTAGCTTTTGATGGCTTTTTTTTTTTAATGGAAAATAAAACAGTACACGTGTGCACTCTCATGTTTTCAG
Seq C2 exon
ATACAGATTCCGGGTGGCAGATGAAGAAAGTCCTACCAAAAAACAGCATTTTCGGAAGTCGGTTGTCGCGCTGGGAGGTAATGAGAATGGAGAGAAACCAAGGGCTCGAAGGCTCGAGTCCTGGAGTCGATTGGGAAGATAAAGGTCAGGACCAATCACAAAATGAGAATCAAGAGGAACGTCTCAAGCAAATGACACTCACCTGTGACAAATTGCCCCTTTTGAATCTGCTCACAGCTTTTAATCAGTGTCCAAGACTGAATACAGCAGAGAAAGCGAAGGAATTTAAATCTGAAAAATCCTTTAGTTTTGCACCCGAGCCCTCTCAGCTTCAGTTAATCCACACAGACGCGAAATTCCGGGAAGATAAAAGCTGCGGAAAGACCTTTCCTCCTGGCCCTAAACTTCCTCGCTACCGTGCAGTTCCCGCCGGCAAGAAGGCATTTCAGTGTGAGGAATGTGGCAAGGCGTTTAGCTTCCGCTCTAGCCTCACGGGTCACAAGAGAATTCACACCGGGGAAAAGCCTTTCAAATGTAAGGAGTGCGGGAAAGCCTTCAGATTCCATTCACTGCTCAGCGTCCACGTTCGGACTCACACGGGCGAAAAGTCATACGAATGTAAGGAATGCGGAAAGTACTTCAACTACAGCTCAGACCTGACCCGCCACCACCGGATTCACACTGGAGAGAAGCCCTATCAGTGCAGGGAGTGTGGGAAGGCCTTCAGCTGCGGCTCAGACCTTACTCGCCACCAGAGGATCCACACGGGCGAGAAGCCCTACGAGTGTCACGAATGCGGAAAGGCCTTTATCCAGCAGTCGCACCTCATTAAACACCAGAGAATCCACACGGGCGAAAAACCTTACGTGTGCAAGGAGTGCGGGAAAGCCTTCACGTGCGGGTCCCAGTTAAGTCAGCATAGGAAGATTCATACTGGCGATAAGTTCCATAAATGTAAAGAATGTAAAAACTCCTTTAGTTTCGCCCTAGACCATACCCAGCGGCAGCTAATTTACATCGGGGAGAAGTTCTTTGAAGACAAGGAAAACGGGAAGGCGTTCTTTCCCGACGCCGAGTTCCCTCAGTACGACACAGCTCCCAGCGGTAAGAAACTGTACGAGTGTAAAGAATGCGGCAAGGCTTTCAGTCTGCGCGCCATCGTCAGCAGCCTCAAGAAAATTCACAACCGGGAGAAACTCTTTAAATGTAAGGACTGCGAGAAGGCCTTCCGGTGCCCCTCAGACCTCTCACGACATCAGAAGATTCACACGGGCGAAAAGCCCTACAAGTGTAAGGAATGCGGGAAGGGCTTTATTTGCAGATCCGACCTGGGCCGGCACCAGAGAGTTCACACCGGTGTGAAGCCTTACGAGTGTAAGGAGTGTGGGAAAGCTTTCACTCGCGGAGCCCACCTGACCCAACACCAGAAGATTCACAGTAAGAAGTCGCACGACTTCAATGAAGGAGAGAAGGCCTTTGGTTCTGGTTCAGACCACACTCCAGGATCCTTGATTGATACCGGCGAGAAATGCTGGGAAGGTAAGGAATACGGAGAGACCGTCCTTCATGACCCAGAGCGTACTCAACCTCAGACTGCTAAGACAACATATGACTGTAAGGAGAAGGGCAAGGACTTTAGTTGGCGTTCACGTGATACGGATCTCAAGACAGTTCATATTCGGGAGAAACGTTTTCAATGCAAGGAATGCCCGAAGGCCTTCAGGTATAGCTCGGAACTGACCCGACACCAGAGACTGCATACTGGAGAAAAGCCATATAAATGTCAGGAGTGCTGGAAGGCATTTGCTTCTGCCTCAGACCTCGCCCGGCACCAGAGGATTCACACCGGTGAGCGGCCCTACGAGTGTAATGAGTGCGGCAAAGCCTTCATTCAGCAGTCACATCTCATTAAACATCAGAGAGTTCACAATGTCGAGCAGCCCAAGGACGTGATGAGTGCGGAAAAATCATCGCCTGGCAGTCAGATGCTGTTAAACATGAGAGAGTTTACACTGGTCAACAATCTTATAAATTTACGGAGTGTTGGAAAGATTCTGCTCATGGCCCAGCTCAGTCAGTGTCCAAAGGTTTATACCGATGAGAAACTAAGTTAAGGTGGGGAACTGGGAAAAGCCTATTTCTGAGTCTCAAATCCTACCCAGCACTAGAATGTCCACATGGGTGGGAAGTCTGGGGAAACCTTCAGCTGTAACTCAAGTGTGTCCATGTCCATCTGTGGCGGTAGAGAGTCCCACAGTGTTAGCAATGTGGAGACGTTTGTGGGTTCAGTGTCTTGCTCAAAGGGAGAAGATTCATGGGAGGAGACTGGATATAAGGAATATGGAAAGACCTTTCTTCATGGTCTTCAATAGACATCTATAAAATCATGCTGACTAAGAGAACTGAATTCAAGGGATTTGGAAACATTCATTCATGATTCTGAACCTAACTGGTAGTAAATACTCAAGAGGCGTAGGAAAGTGTGGAAATGCCTTTCAGAATCACAGTGTTAGAGAGCGTAGACTGGCGAGCAACCCTGGCTGTCCGAGAAAGGTGGAAAACCTTTGATCTTGGACTTGCCTCTCATGTGACAGCCCCATAAAGGTTATGAAAAGTGACTTTAGTTAGTCAACACCCGGACATTTATACTTCCTCCTGTGGAGCGAAGCCCAGACCCTGTGCGTGCTGAACACGAATTCCTGTTTCTTAGCTGCACCTCTGACCCTCATGTTTGAGGAAGCCCATGAAGATAAATAAATATATGGAGATGTTTTACACAAAAACAAGAAAAGCTAATTTATTTCTAACTCACTGAGTTAATTTTGTTTTTTAGTAAAAAAAGAGCTTTTGGTAAAATAACATGTCTGTCATCCAACGTCATGATGTAATGGCTGTTAATTTAGGAAAAGCTTTACTGGTGGGTTATTTATGTATGGTGAGGATGTCTTATAAGAGAAGTGGTATATAGCTCTATTGCAGAATATTTGTAGTGACATGTAAATGTGTAACATATGTGAGACGTGATTTTTATATGTGTCCTAGGGAAACTTTGAAGTGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029043:ENSRNOT00000028158:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.139
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]