HsaINT0188576 @ hg19
Intron Retention
Gene
ENSG00000234284 | ZNF879
Description
zinc finger protein 879 [Source:HGNC Symbol;Acc:37273]
Coordinates
chr5:178450776-178452038:+
Coord C1 exon
chr5:178450776-178450905
Coord A exon
chr5:178450906-178451970
Coord C2 exon
chr5:178451971-178452038
Length
1065 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
AGCTTTTTTCTCCATTCCAGGTG
3' ss Score
11.37
Exon sequences
Seq C1 exon
GAAACCCGTCGGCTCTCCGGCGCGCAGGCGCAGTTGCGCCCGGCAGCGACGGGAAACGTCTCTGAATTAGGTGTTCCGCTCGCCTCTTGTGCGGTGTGGAGCTGCGCGCCCCCCGCCGAGGCGGGCCCAG
Seq A exon
GTACAGGCTGCCGGTGAGGGCGGGCCCGGGGCGTGCGGCTGCCGCGGCGGGACCAGGACGAGGGCTGGCCTCTGCGCGTGTCTGCCGAGTCCCCGGCTCCGGGCGTCCGAGCCGGGGCGGCCTCGGCAGGTGAACCCGGCCCCGGAGGGGGCGTGGCCTGGGAAGGGCCTGGCGGAGGCCGGGAGGGCGCTTCGACGCCGCTGGACTCCTGGGCCGCAGCCTGGGCCGGACTCCGGGGGAAACGGCTCCAGAACAGAAACTGCAAAATGCCGCCTCGGTTCAGGGTCCGGAGCCCTCCGGGCGGTTTTTCGCTCTTAGTGTTTGTGGGTTTAAGCCTCCCCCTACTCCGTTTCCCGGAGTTTAAACTTTAGATTTACTCGTTTTTGGCAGTCTTGCACGTTTGGCAGTGTTTTCCTACAGCCAGTCCTAGAGTGATTTAACTATTTCTTTTTTTATTTACCGTAACCATGTCCACTTGCTACGTTTCTTCCCATTTCTCTAAATTTTAAATCAATTTCTAGCTAGTGATGCTGTTTTCTTGCGCCCTTGTTTTTTTGGGGCCAGGGAGAATGGGTAACGCTACCTTTAAGCAGCTTTGATAACTGTTTTTGATAAAGGAAGTAAATCTTACAAGAGGAAGAAAAGAGGACTAATTTTTGGTTGGCTGTTCCTAAAAAAGAGCATCAGTTCTTCAACTGCTGTTTTTCGTATTGAACAACATCCAAGTGCAGATGTGTGGAATATTGTGTCATTTCCTATTACTTTATCTGAATGAGCCTTGCCTGATTCTGCCCTTGACCCTGTTAAGGCACGGCAGATGGTCTTCATCCCTTCGCTCCTTTCGTCTTTATCGTAAAGCACTGGCAGAAAGGTAGCAGGCCCGGTGACTCTGAACCTGCTTCCCACACTGGTTTAAGTGGCCGGACTTAGGGCCCCTCTGGCCTGGGCAGTTCCAGGCTCCTTCTCTGCAGGTGCTCAGCTTATGGCTTCTAACCTGGTCTGGCCTAATGAGGGTGGGCATGCAGGCTGGATGAAAAGACCTCACAGCTTTTTTCTCCATTCCAG
Seq C2 exon
GTGCCTTCTCCAAGAGAGGCAGCAGGGAGGGAGAAATGGCAAGGAGGTTGCTGCCAGCCCATGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000234284-ZNF879:NM_001136116:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACCCGTCGGCTCTCC
R:
CTGTACATGGGCTGGCAGC
Band lengths:
198-1263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)