HsaINT0188576 @ hg38
Intron Retention
Gene
ENSG00000234284 | ZNF879
Description
zinc finger protein 879 [Source:HGNC Symbol;Acc:HGNC:37273]
Coordinates
chr5:179023752-179025037:+
Coord C1 exon
chr5:179023752-179023904
Coord A exon
chr5:179023905-179024969
Coord C2 exon
chr5:179024970-179025037
Length
1065 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
AGCTTTTTTCTCCATTCCAGGTG
3' ss Score
11.37
Exon sequences
Seq C1 exon
ACAAACGCTGCGGTTCAGCCAGGGAAACCCGTCGGCTCTCCGGCGCGCAGGCGCAGTTGCGCCCGGCAGCGACGGGAAACGTCTCTGAATTAGGTGTTCCGCTCGCCTCTTGTGCGGTGTGGAGCTGCGCGCCCCCCGCCGAGGCGGGCCCAG
Seq A exon
GTACAGGCTGCCGGTGAGGGCGGGCCCGGGGCGTGCGGCTGCCGCGGCGGGACCAGGACGAGGGCTGGCCTCTGCGCGTGTCTGCCGAGTCCCCGGCTCCGGGCGTCCGAGCCGGGGCGGCCTCGGCAGGTGAACCCGGCCCCGGAGGGGGCGTGGCCTGGGAAGGGCCTGGCGGAGGCCGGGAGGGCGCTTCGACGCCGCTGGACTCCTGGGCCGCAGCCTGGGCCGGACTCCGGGGGAAACGGCTCCAGAACAGAAACTGCAAAATGCCGCCTCGGTTCAGGGTCCGGAGCCCTCCGGGCGGTTTTTCGCTCTTAGTGTTTGTGGGTTTAAGCCTCCCCCTACTCCGTTTCCCGGAGTTTAAACTTTAGATTTACTCGTTTTTGGCAGTCTTGCACGTTTGGCAGTGTTTTCCTACAGCCAGTCCTAGAGTGATTTAACTATTTCTTTTTTTATTTACCGTAACCATGTCCACTTGCTACGTTTCTTCCCATTTCTCTAAATTTTAAATCAATTTCTAGCTAGTGATGCTGTTTTCTTGCGCCCTTGTTTTTTTGGGGCCAGGGAGAATGGGTAACGCTACCTTTAAGCAGCTTTGATAACTGTTTTTGATAAAGGAAGTAAATCTTACAAGAGGAAGAAAAGAGGACTAATTTTTGGTTGGCTGTTCCTAAAAAAGAGCATCAGTTCTTCAACTGCTGTTTTTCGTATTGAACAACATCCAAGTGCAGATGTGTGGAATATTGTGTCATTTCCTATTACTTTATCTGAATGAGCCTTGCCTGATTCTGCCCTTGACCCTGTTAAGGCACGGCAGATGGTCTTCATCCCTTCGCTCCTTTCGTCTTTATCGTAAAGCACTGGCAGAAAGGTAGCAGGCCCGGTGACTCTGAACCTGCTTCCCACACTGGTTTAAGTGGCCGGACTTAGGGCCCCTCTGGCCTGGGCAGTTCCAGGCTCCTTCTCTGCAGGTGCTCAGCTTATGGCTTCTAACCTGGTCTGGCCTAATGAGGGTGGGCATGCAGGCTGGATGAAAAGACCTCACAGCTTTTTTCTCCATTCCAG
Seq C2 exon
GTGCCTTCTCCAAGAGAGGCAGCAGGGAGGGAGAAATGGCAAGGAGGTTGCTGCCAGCCCATGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000234284:ENST00000444149:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGGTTCAGCCAGGGAA
R:
CTGTACATGGGCTGGCAGC
Band lengths:
214-1279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains