MmuINT0180026 @ mm10
Intron Retention
Gene
ENSMUSG00000044296 | Zfp879
Description
zinc finger protein 879 [Source:MGI Symbol;Acc:MGI:3053099]
Coordinates
chr11:50840526-50841552:-
Coord C1 exon
chr11:50841370-50841552
Coord A exon
chr11:50840593-50841369
Coord C2 exon
chr11:50840526-50840592
Length
777 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
3' ss Seq
GAGTTTCTTTCTCTGCCTCAAGG
3' ss Score
-10.1
Exon sequences
Seq C1 exon
CTTACCCGCTCTGGGCATTGAGCTTTCTGGGTTTTCTGGCAGAGCTGGAACGGCCGGGAACCTGCGGGCCAGGGCTGAGAGCCTGGCGGAAGCACGCAGAGGCCTCAGCTGCTGGTGAGGGCCTCGGGCCCTGACTCCAGGTTCTGCTGCCCGAACAGCGGTCAAAGAAGCCTCCGGCTTCAG
Seq A exon
GTTAGCTAGTCAAGTCGGCCTTGAGCAGATCGCCTGTAGGCTTTCAATCCTGGAGGTGAAACTTAGTTTCTGTCAGTCTTCGGTGCTGGACAGTATCTTAACTGAATTCCACAGTCCATTTTTTCCACTTGTGCCTTTGCTCTAAGGTTTTACTGTTGGAAAGGAGCAGAACGATGCTGGGCACGGAGCCCAGAACGTGTTAATATCATTCCCTCTACAGGAGCTGTCCTCCACCCCCTTTTTCTCTAAAATGTAAATTGAGTTCTGGCTAGTGCTGCTAGTTCTAGCTTGGGTGTGTGTGTGTCTGTTCTTGTTAATTTAAGTGACTTTGGTAATACTTTGGACCAGAGGCGAAGGCCCATGAGGAAGAGTGGACTAACTTCTAGTTGGTGGAGTCTGCAAAGGGCATGCATTCTGCAGGTGTGTCTTTCACTTGCAATGTCCAAGTGCAGATATGTGGAATATTTGTGCTTTTTCCTTACCTCCGGGAGTTGCACACAACGGTGCCCTTTACCTTGTTAATAATGAATTTGATAGCTGCGACTGTTTAGTTCAGTTCATCTTTATTCATAACCTCAAGTGAAAAGGTCATAGGCCCGTTGACAGTGTGCTTATACTTGGTACTCCTGCCCAGGTTCCCTGTCGCTTGGGTTCCCTGTCGCTTGGGGAGGTTGGGTTGTGCAGCTACCCAGCAGGTGTTTTCTAGCCTGGTGTGGCCCAGTGAGGGCTGGAGGGCAGCCAGGATGAGTAGACCTCAGAGTTTCTTTCTCTGCCTCA
Seq C2 exon
AGGGTCTTCTCAGGAGGAGCTACAGAGGGAGAAAATGACCACGAGGTTGCTGCCAGCCCAGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044296:ENSMUST00000109134:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCATTGAGCTTTCTGGGTT
R:
CTGAACCTGGGCTGGCAG
Band lengths:
238-1015
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types