MmuINT0180026 @ mm9
Intron Retention
Gene
ENSMUSG00000044296 | Zfp879
Description
zinc figer protein 879 [Source:MGI Symbol;Acc:MGI:3053099]
Coordinates
chr11:50654028-50655054:-
Coord C1 exon
chr11:50654872-50655054
Coord A exon
chr11:50654093-50654871
Coord C2 exon
chr11:50654028-50654092
Length
779 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
3' ss Seq
GTTTCTTTCTCTGCCTCAAGGGT
3' ss Score
7.93
Exon sequences
Seq C1 exon
CTTACCCGCTCTGGGCATTGAGCTTTCTGGGTTTTCTGGCAGAGCTGGAACGGCCGGGAACCTGCGGGCCAGGGCTGAGAGCCTGGCGGAAGCACGCAGAGGCCTCAGCTGCTGGTGAGGGCCTCGGGCCCTGACTCCAGGTTCTGCTGCCCGAACAGCGGTCAAAGAAGCCTCCGGCTTCAG
Seq A exon
GTTAGCTAGTCAAGTCGGCCTTGAGCAGATCGCCTGTAGGCTTTCAATCCTGGAGGTGAAACTTAGTTTCTGTCAGTCTTCGGTGCTGGACAGTATCTTAACTGAATTCCACAGTCCATTTTTTCCACTTGTGCCTTTGCTCTAAGGTTTTACTGTTGGAAAGGAGCAGAACGATGCTGGGCACGGAGCCCAGAACGTGTTAATATCATTCCCTCTACAGGAGCTGTCCTCCACCCCCTTTTTCTCTAAAATGTAAATTGAGTTCTGGCTAGTGCTGCTAGTTCTAGCTTGGGTGTGTGTGTGTCTGTTCTTGTTAATTTAAGTGACTTTGGTAATACTTTGGACCAGAGGCGAAGGCCCATGAGGAAGAGTGGACTAACTTCTAGTTGGTGGAGTCTGCAAAGGGCATGCATTCTGCAGGTGTGTCTTTCACTTGCAATGTCCAAGTGCAGATATGTGGAATATTTGTGCTTTTTCCTTACCTCCGGGAGTTGCACACAACGGTGCCCTTTACCTTGTTAATAATGAATTTGATAGCTGCGACTGTTTAGTTCAGTTCATCTTTATTCATAACCTCAAGTGAAAAGGTCATAGGCCCGTTGACAGTGTGCTTATACTTGGTACTCCTGCCCAGGTTCCCTGTCGCTTGGGTTCCCTGTCGCTTGGGGAGGTTGGGTTGTGCAGCTACCCAGCAGGTGTTTTCTAGCCTGGTGTGGCCCAGTGAGGGCTGGAGGGCAGCCAGGATGAGTAGACCTCAGAGTTTCTTTCTCTGCCTCAAG
Seq C2 exon
GGTCTTCTCAGGAGGAGCTACAGAGGGAGAAAATGACCACGAGGTTGCTGCCAGCCCAGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044296-Zfp879:NM_173387:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGGCATTGAGCTTTCTGG
R:
CTGAACCTGGGCTGGCAG
Band lengths:
239-1018
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: