RnoINT0168728 @ rn6
Intron Retention
Gene
ENSRNOG00000030517 | Zfp879
Description
zinc finger protein 879 [Source:RGD Symbol;Acc:1563273]
Coordinates
chr10:36335633-36336628:-
Coord C1 exon
chr10:36336444-36336628
Coord A exon
chr10:36335700-36336443
Coord C2 exon
chr10:36335633-36335699
Length
744 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
3' ss Seq
AGCTTCTTTCTCTGCCTCAGGTG
3' ss Score
9.28
Exon sequences
Seq C1 exon
GTCGTACCCACTGTGGGCATTGAGCTTATTGGGCTTTCTGGTAGAGCTGGCACGGCCGGGAGCCTACCGGGTAGGGCTGCGGACCTGGCGGGAGCGCGCTGAGGCTTCGGCGGCAGGTACGGGCCTCGGGCCCTGACTCCAGGTCCCGCGGCCCGAGCAGCGGTCAAGAAAGCCTCCGGCTTCAG
Seq A exon
GTTAGCGAGTCAGGTCGGCCTTGAGCAGATCGCCTGCAGGCTTTCCATCCTGGAGCTGAAACTTTGTTTCTTCGTTTCAGTCAGTCAGTCTTTGGTGCTGGACAGTGTCTTACAGTGAATTCCACAGTCCTTTTTTTTTTTTTTCCTCTGTACCTTTGCTCTAATATTTTACTGTTGGAAAGGAGCAGAAAGATACTGGTTAATATCATGCGCACTACATGAGCTGCACAGTTCTGGCTAGTGATGCTGTTCCTCGTACGCGCGCGTGTGCGTGTGCGTTCTTGTTAATGACTTTAAGTGACTTTGGTAATTCTTTTGATCAGAGGCAAAAGCCCATGAGGAAGAGTGGACTAATTTCTAGTTGGTGGAGTCTGTAAAGGGCATGCATTCTGCAGTCGTTTCTTTCCCTTGCAATGTCCAAGTGCAGATATGTGGAATATTTGTGTTTTTCTCTTACATCCGGGAGTTGCACACAATGGTGCCCTTTACCTTGTTAACTTGATAGTTGTGACTGTTTCGTTCAGTTCACCTATAATCATAACCTCTAGCGAAAAGGTCACAGGCCCGATAACATAGTGTCCGGTTGCCTACTTCTGGCTTTGGCACTCACACCCAGGTCCCCTGTAGTTTGGGAAGGCTGGGCAGTGTGGATCCCCAGCAGGTGTTTTCCAACCTGCTCTGGCCCAGTGAGGGCTGGAGAGCAGCCAGGAGGAGTAGGCCTCACAGCTTCTTTCTCTGCCTCAG
Seq C2 exon
GTGTCTTCTCAGGAGGAGCTACAGAGGGAGAAACATGACCAAGAGGTTGCTGCCAGCCCAGCTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030517:ENSRNOT00000030035:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCATTGAGCTTATTGGGCT
R:
CCAAAGCTGGGCTGGCAG
Band lengths:
238-982
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]