BtaINT0166173 @ bosTau6
Intron Retention
Gene
ENSBTAG00000038541 | ZNF879
Description
zinc finger protein 879 [Source:HGNC Symbol;Acc:HGNC:37273]
Coordinates
chr7:2255661-2256881:-
Coord C1 exon
chr7:2256798-2256881
Coord A exon
chr7:2255732-2256797
Coord C2 exon
chr7:2255661-2255731
Length
1066 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
ACTTTCTTTCTCCCTTTTAGGTG
3' ss Score
14.26
Exon sequences
Seq C1 exon
CGGCGGCGACGCTAAGTATCCTGCACTAGGTTCTCCTCTTACCTTCTGTAGGGTCCGCCGCTTCCCACGTCCCGGCGAGCACAG
Seq A exon
GTACAGACTGCCTTTGAGAGTGGGCCCGGGGTGTTAGGCTCCTACAGCAGGGGGCGGACAGAGGGTCAGCCGCGGCGAGTCCCAGCTTCGGGCGTCCAAGCCCGGGCGGCCTTGGCAGGTGAACGCGGCCGGAGGAGGGGGCGTTGCCCCGGCAAGGCCCCTCGACGGACGGCGCGGCTCAGTCTGGGCCAGGCTCCCAGAAAGGTGTCCCTCGAGAAGAGATTGCAAGGAGCTGTGTCTCATTTCGGGATTCGTGAGCCCTGAGGCGGTTTTCAGCTTTTACCGTTTGTTGGTATTTTCCCCCTGCAGTTGAAACTTAATGTTTATGCCTTTTGCCAACCTTGTATTTTGGCATTGTTCAGGCTGAATCCTGAGTGACTTAACTGTTTCCTTTTGTGTTTAATTTTGTCCACTTGTTAAGTTACGTCCCTTTCCTCTAAATGTTAAATTCATTTCTAGCCAACGAAGGTATTTTTTATGTCTTGTACTTTTAGGAGCGTGGGGGTATGGAAGGTGGATCGGTAACGTTTCCTTTTACAGTTAAGGATGTTTAATAACTTTCTTCACAAAGGAAACACAATGTCCAAGAGGAAGAGAAGAGGACTAATTTTTGGTTGGCTGTTTCTGAAAAGGACACCAATTCTTAAAATGACATTTGAAGAATTATTATAATCCTAATTACTACAGCTCAAAATACCTAAATGCAGGTGTGAAGAATATTTGTCATGTCTCATCAGTTTAATGTCTCTGTGAGCCCGGTGAGACTGCTGTTTACAGTGTTAATTTGTATCAGGTGGTTCTAATACCTTCATTTAATTCATCTTTATTCATGAATCATTGGCTGAAAGGTTGCAGGCTCAGGGACTGGAAGTCTGCTTACTGTGCACTCCTGGTTTTGGTGGTCAAGCACAGGTCCCCTCCAACTCAGAAATGCCTGGGCTTCCAGGTTTCCTTTGGTTTCTACAGGGTGCTCAGCCTGTGGAGACTTCTTAACCTGGTCTAACCCTAATGAGGAGGGGAGTGCAGATAGAATGGAAAGACCTCACACTTTCTTTCTCCCTTTTAG
Seq C2 exon
GTGCCCTCTCTAAAAGGAGCAGCAGGACGGAGGGAGAAATGGCCACAAGGTTGCTGCCAGCCCAGGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038541:ENSBTAT00000005584:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]