HsaINT1000058 @ hg38
Intron Retention
Gene
ENSG00000154263 | ABCA10
Description
ATP binding cassette subfamily A member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr17:69149984-69152183:-
Coord C1 exon
chr17:69152043-69152183
Coord A exon
chr17:69150064-69152042
Coord C2 exon
chr17:69149984-69150063
Length
1979 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
CTCACTCTTCTTCCTGACAGATA
3' ss Score
10.92
Exon sequences
Seq C1 exon
GTGTATTGGTTCCATTCAACATCTGAAAAACAAGTTTGGTAGAGATTATTTACTAGAAATAAAAATGAAAGAACCTACCCAGGTGGAAGCTCTCCACACAGAGATTTTGAAGCTTTTCCCACAGGCTGCTTGGCAGGAAAG
Seq A exon
GTAAAGGATGTTTTCGGTTTGAGTGACAAGTATGAGTGTTTTCCAGTATTAGCATCAATTAGTTTTGTGCTAGTCTAAACCGGAAGAGAAAGGCAGAGTGGACTTATTCATCACAAAACAACCTGTTTGAGGATTGCTAGGATGCGTTACAAAAACTAAACAGTTATTTTCAGTGAGTGTTTTAGACCTCAGAAAAGGTGAATGGTGTGTGTGTGTGCATTCATATATGTGTGTAAATGGTGGAATGGCTTGGAGATTAAGAACAAAGTACAGACAAATTAAACTATCAACTTTTTAATGATTTTTAAAAAATAGACAATGAAAACAATGCTTTCACCTACAGGATTTTGCTGAATATAAATTGCATCAAGAGCTCCGTAACACAGACTTCCATGCTTGAGAAGGATTGACTCTATCCTAAATTATTCAATTATAAATCATTTGATCCTCCCAATGTTTCTTTTAAAGTTGTATGTGGTCAACCATGTGTTACAAGTAATGGTAATCAAACCCTTGTGAATAGCAGAATGAGGCTGAATTTAATTGAAAGATGAACAGAATTTTCTTGTATACCATTTCTACTCATTTATTTTTATAATATTTGTTATATTTATTGAATACGTATTATCTGCTGCCGGCTGTGTATTGAATAGTCAACAAAATAGACAAGGTTCTTCCTTTTGGAGGTGAAGATATTAAGCAAATGAAGATACAAATAAATGAGGATATGACATTGAGGTAGGACTTTAAGACTGAGCAGGGTTTGGTCAGCTGAAGAGTGGGAGTAACAGACACTGTTTCCAGGAAACAGCACATTTAAAGAACTTAGGTCAAGAATGAATTCTACAAATGTCAAGGATGAAACAAAAGCTCATGTAGTTGATGTGTAAAGAGATATCCAAGTGGAGATGCCAAAGTAAGAGATGTAGACCTGTGGCTCACAAGAGAAGGAAGAGGTCATTGAGATCTGGTCTGGCAACAAACAAAGTGGGGGATTTTTTTTACCATATAGAAGACCATTAAACTAGGAGAATGTTGAGGCCAACAAGAGAGATAGGAAGTCGGATGAACCCCAGGAGCTCTCAGCTTTGAGATGGGATTGAGGAAGAAAATAAATCTTCCTGTGTGGACAGTACCACCACAACCATACCAACAAAGACTGAGGAGTATCTAGAACAGCATTGGCCAGTAGAATTTTTGTGATAATGAAAATGTCCTTTCTGTGCTGTCCAGGATGGTAGTCACTACACATACGTAGCTACTGAGTACTTCAGATGTGGCTGGTGTGAATGAGGAGTTGAATTTTCAATTTTATTTATTTTAATTACTTTAAATAGCCACATGGATTTAATAGCTACTCTATTAAGCAGTGCAGGCCTAGAGAGTTAGAAGGAAAATCGTAAGTGTGGTTGTCTCAGAAGCTAAGAGAGAAAGAGTATGTTTGTTTTAAGGAGGGTGTGTACAATTTTATTTAATGCTTTTGAAAAGTTTGCAAAATGAGGACTGAAGAGTGTTCCTTGGATTGTGCAACATGAAAGGGGGTCTGAAGGTCAAGAAAAAAATTTTTTTTTAGCAGGAGAGAGTTCAACATATTTTAATTTTTATAGGAGAGATTGAAAATTAAATCTCAATCTCTCCTATGAGAGAGGGGAAAGGTAATGTAAACATTCTAGAAAGGTTGCTTTTTGAGAGTAAGTAAGAAATATAGCACAATAACAAAGTGCAGGCTGAGTGGGAAAGATTCTTAATCAGAGCTATTTCTCAGAATTTATCTTTAACATAAAATTAGAGGCAACCAGATTTTTGTTGTTATAACTTTTTTTATGATTGAATCTGTAATTTCACACTGATTCATGCTATATCAAATCAGACACTTATTTAAAGAACACATTGAAAAATTATTTTACTTTGCCTATTAATTCCTCCCCCGTATTATCACACTGAAACTTAGTAATAAATCTCACTCTTCTTCCTGACAG
Seq C2 exon
ATATTCCTCTTTAATGGCGTATAAGTTACCTGTGGAGGATGTCCACCCTCTATCTCGGGCCTTTTTCAAGTTAGAGGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154263:ENST00000269081:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTATTGGTTCCATTCAACATCTGA
R:
CGCCTCTAACTTGAAAAAGGCC
Band lengths:
220-2199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains