RnoINT0010464 @ rn6
Intron Retention
Gene
ENSRNOG00000004147 | Abca8a
Description
ATP-binding cassette, subfamily A (ABC1), member 8a [Source:RGD Symbol;Acc:1307333]
Coordinates
chr10:98322368-98324363:-
Coord C1 exon
chr10:98324223-98324363
Coord A exon
chr10:98322448-98324222
Coord C2 exon
chr10:98322368-98322447
Length
1775 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGC
5' ss Score
5.61
3' ss Seq
CAGCCTTCCTTTCTTCCCAGGTA
3' ss Score
9.72
Exon sequences
Seq C1 exon
ATGTATTGGATCCATCCAACATCTAAAGAGCAAATTTGGCAAAGAATATCTCCTGGAGATGAAGGTGAAGACCCCCACACAGGTGGAGCCCCTCAACATGGAGATCATGAGGCTCTTCCCCCAGGCTGCTCGGCAGGAAAG
Seq A exon
GTTAGCACGGTTTTGGGGGTGCGCTTGTATATGTGTGTGTGGCTGTTGGTTGGTCTGTCTGTCTGTGCACATGTGCACACAAATGTACATCAAAACACATAAGCTCTCACACGTGCGTGCAGGTATACACACACACACACGCGCGCGCGCGCGCGCACATGCGCACGCGCACTATAGGCCACATGTCAATGTCCCTTATCTCTCTCTTATCATTTGAGACGGTGTAACAGTCTCTTTCACTGAGCCTGAGTTAAGCATTTTGCCACACTGGCTTGCCAGGAAGCTCTAGGGATAAGCTTGTTTCTGCTGAGCTCTTTCCCATCCCCAACCAGCGCCAAGATTACAGACACACTTAGTCACATCCAGTTTGGGTGAACTCTGGGTTATAAACTTAGGTCCCCATGCTTGCCTGGCAGGTACTCTCCTGGCTGAGTCAACTCCCCAGGGCTCACTGTGCCTGTTTTTGATCTAGCAAAGTACATTCACTTTCCCCTGGAATTTGTTTGGGTTGGTAGACACTGTGGGTCATGTTTACCCTGTAAGAGAACCTCAAAGAGGTCACTGAACTGTGGGCACTGCTGGAAGTCTATTAGAGAACAGAGGGCTGGTTGTAAATCACACACATGGGTGTGGTCCAACTATGTGGCAGGTTCTGTTTAGGGCTTGGGTTATCCAGTTGTCATCTGATCTTTAAAAGTAAGTAGCATGGGTTGGGGATTTAGCTCAGTGGTAAAGCGCTTGCCTAGCAAGTGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAAAAAAGAAAAAAAAAGGAAGTACCATTTTAATCAAATTAACATCCTGGGTAAGACTTGGAGTTGCCTTACTTAACATGGAGGAGGAGACTTTGATTTGGGTTGGATGACACAGGGGTGACCTAAGCACAGTCACAGGTACACTTCCCACATTTGTCTTGGGCCTTTGTAATTCCTACTCCTGCTCCAGATACATTGTATCAACCCCAACACCTAAAGAGCAAATTTGTCAAAGAATATCATAGGAATGCACTAATCATATTTCACCAGCATCTTTACTAATGGAAGCTTCATGCAATCATAAGTAAGATTATGACAGAGTTGACTGATGACAAGAGGGTAATTCTTTTTTTTATTCCGTGTTTGTAAGAGCTCTAATTCTGTATAAATTATCTCACATAAACGAAGTCAATAAACACTGCTGGTGAGATAAAATGCTCTGTAAAGAAAGGAAATAAATCCTTTGAAGTGAATTAATCTGTTCTGAATATGTGTTGACAGTGGGTAGTTAAGTGCCTCTGACCAACAATTGATGAACTCTGGGTCCTCCTGAAGAAAACGTGGTTTCCTTTCCTGGGGACTTTCAGGGTCCCCTCTGCATGAGGAAAGCACTGAGAGTTTGGGGAGGAGGTGCCTAAATATTGACTCTGTACTGAATAAGTAGATTCCTATTGTGTTTGGAAATTCTAGAAAGCTGTGGGGTGGTAAAAGGAGACTGTGTTCTGTGTTCCCAGTCGAGACCGGGTGGGAAAATCCAGTCTCAAAATGTTGCCTAGACTGGCCCTACACGGGTCCTTCAAGGAGCCTGAGATACTGAACCAGTTCTCACTCAGCTTGCCCTACCTCCCTTCCTGTCAACTGGCCTGCTTCACTCACCTCACTCTAGAGAGTCAATTATGCCCAAGAGTCTTATTTATGAAAAGAAATGTAGTGGACACCATAGATGTTAGGCCACATGAGACCAACCCAGCCTTCCTTTCTTCCCAG
Seq C2 exon
GTACTCTTCTCTGATGGTCTATAAACTGCCCAGGGAAGATGTGCAACCTTTATCCCAGGCCTTTTTCAAATTAGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004147:ENSRNOT00000005665:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCATCCAACATCTAAAGAGCA
R:
CTGTCTCTAATTTGAAAAAGGCCTGG
Band lengths:
214-1989
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]