GgaINT0127084 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSC3]
Coordinates
chr18:8207742-8208096:-
Coord C1 exon
chr18:8207956-8208096
Coord A exon
chr18:8207822-8207955
Coord C2 exon
chr18:8207742-8207821
Length
134 bp
Sequences
Splice sites
5' ss Seq
AAGGTCCCG
5' ss Score
-0.18
3' ss Seq
ACTTTTTATTGCTTTTTCAGGAT
3' ss Score
11.08
Exon sequences
Seq C1 exon
GTACATTGGTTCCCCTGAGGAGCTGAGAAGGAAGTCTGGTATGAGTTACCACCTGGAAGTCAAACCGAAGGACGTGGGGCAAAGCGATGCTCTCCATAGTGAAATTCTGCACCTCTTTCCTGGCGCAGCTCGGCAAAAAAG
Seq A exon
GTCCCGGACACATGCTGGGATGCACTGACCCTGCTCAGTCATTTACCCAATAATGCAGGAATCCTAAAAGCACGCCTATACTTTGGTGCTGAGTCTCATCACGATGAAGGGGTCACTTTTTATTGCTTTTTCAG
Seq C2 exon
GATTTCTTCTTTGCTCACCTACAAGATACCAATGGAAGATGCACTACCTCTGTCCCAGGCTTTCTCCAAGCTAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021395:ENSGALT00000034529:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACATTGGTTCCCCTGAGGA
R:
CTTGGAGAAAGCCTGGGACA
Band lengths:
211-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]