HsaINT1003733 @ hg38
Intron Retention
Gene
ENSG00000163046 | ANKRD30BL
Description
ankyrin repeat domain 30B like [Source:HGNC Symbol;Acc:HGNC:35167]
Coordinates
chr2:132156973-132157423:-
Coord C1 exon
chr2:132157309-132157423
Coord A exon
chr2:132157147-132157308
Coord C2 exon
chr2:132156973-132157146
Length
162 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TTTTGCTTTAATACTGACAGGCT
3' ss Score
5.79
Exon sequences
Seq C1 exon
GACTGCTCTATACTGGGCCTGTGCCAATGGCCATGCAGAAGTAGTAACACTTCTGGTAGATAGAAAGTGTCAGCTTGACGTCCTTGATGGTGAAAACAGGACCATTCTGATGAAG
Seq A exon
GTAAATGGTAGCCAGTTCTTTCAGCAGGAGATGGATTTGGTTTAAATACATAGAATAAAAATGAATCTATCTCATTGAAATATAACTGGTTTGTGAAACCTGTGGAATATTTATTTATATTTCCTATAATTTATAATTTACTTTTTGCTTTAATACTGACAG
Seq C2 exon
GCTCTGCAATGCCAGAGGGAGGCTTGTGCAAATATTCTCATAGATTCTGGTGCTGATCCAAATATTGTAGATGTGTATGGCAACACAGCTGTCCATTATGCTGTTAACAGTGAGAATTTGTCAGTGGTGGCAAAATTGCTGTCCTGTGGTGCAGACATCGAAGTGAAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163046:ENST00000409867:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF136371=Ank_4=PD(35.8=48.7),PF127962=Ank_2=PU(21.6=41.0)
A:
NA
C2:
PF0002325=Ank=PD(72.7=41.4),PF127962=Ank_2=PU(27.5=43.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAATGGCCATGCAGAAGTA
R:
TGCACCACAGGACAGCAATTT
Band lengths:
246-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains