HsaINT1017236 @ hg38
Intron Retention
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr7:128892869-128893319:-
Coord C1 exon
chr7:128893238-128893319
Coord A exon
chr7:128893022-128893237
Coord C2 exon
chr7:128892869-128893021
Length
216 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TGACAGCCCCCTTACTACAGCCT
3' ss Score
3.63
Exon sequences
Seq C1 exon
GCTGGCGAGGTCTCCTGTGAGGAGCAGGAGTGCCCAGTCACCCCCTGTGCCCTGCCTGCCTCTGGCCGCCAGCTCTGCCCAG
Seq A exon
GTGTGTGTGAGAGGGGGAGGAGCAGCTGCTATGGGCGCTGCCTCTGAGGGCTGCAGAAGGAGGGTGCTCCTTCCCAGGACGGGGTACGGGTTGCTAAGTCCACTAGCCATTCTACAGTGTCAGCGGGGATGGCGAAGGTGGGGTCCCTGTGTCCTGGGAAGGACAGGGATGGGTGGGAGGTGTGTAGGCTGCCATGTGACAGCCCCCTTACTACAG
Seq C2 exon
CCTGTGAGCTGGATGGAGAGGAGTTTGCTGAGGGAGTCCAGTGGGAGCCTGATGGTCGGCCCTGCACCGCCTGCGTCTGTCAAGATGGGGTACCCAAGTGCGGGGCTGTGCTCTGCCCCCCAGCCCCCTGCCAGCACCCCACCCAGCCCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253:ENST00000620378:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=FE(47.4=100)
A:
NA
C2:
PF0009313=VWC=PD(1.8=1.9),PF0009313=VWC=PU(87.7=96.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCGAGGTCTCCTGTGAG
R:
TACCCCATCTTGACAGACGCA
Band lengths:
173-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains