HsaINT1024088 @ hg38
Intron Retention
Gene
ENSG00000105357 | MYH14
Description
myosin heavy chain 14 [Source:HGNC Symbol;Acc:HGNC:23212]
Coordinates
chr19:50255220-50257486:+
Coord C1 exon
chr19:50255220-50255318
Coord A exon
chr19:50255319-50257298
Coord C2 exon
chr19:50257299-50257486
Length
1980 bp
Sequences
Splice sites
5' ss Seq
GGGGTGGGT
5' ss Score
3.34
3' ss Seq
TCTGCATCTCCATCTGACAGTGG
3' ss Score
5.78
Exon sequences
Seq C1 exon
AACATGGGGGCTTCCAGCAGTTCTCTTTCCTTGGCTCCTTCCCACCGTCGCCCCCAGGATCTGCAGAGAGGTGCAGCTCTGCTATTTCTCCGCCAGGGG
Seq A exon
GTGGGTGTCTCTGTGCATCGATGGGTGAGGCTTGCTGGAGGAGGAGGGTGGACCTGTTGGGCTGGGGACCTGGTTTTGAACATCTGTCCCCTCTCCTCTTACTGTGGAGGTCTCTCACTCTTCCTTTCCCTCCTTGTTGGCTCCCTTGGAAGTTTCCAGACTCTGTAGCAGCAGAACCCCTTCTTCTAACTAAACTGCATGTAAAAGTACAAACAAGCGTGATAGTACCAGCTCGCGTTTCTTGAGCACTTACTATGTGCCGTTCACCATGTGAAACCCCTTTAGAATTATCAACACCCCATTACACAAATGAGGAAACTAAAGCACAGAGAAGTTAAGTAACTTGCTGAGGTCACACAGCCAGTAAGTGGCAGAGCTGGGATTTGAACCCAGGACATCAGATTCCAGAACTTTAGTTCTTATCTGTGCTATGAGGACTTAATAAATGATAATTATCATTTTGAAAATGACAGGGAGTACGGGGTAGGGGAGACGGTTGAACCTGGGGAAGAAAATAACATATTTGAGCCCCTGCCATGACCTGGCCCTGCCCTAAGCACAGATTATCTAGTTGACGGTTGATGGCGCTTGAATGGGATGAGTTTTGCAGGACATCAGATTCTGCCCTAGCTGTGGGTTCCTGAGGAACCTGGCATGATTCAACACATAGAATTTGGGACCAGGTGCATTGGCTCACCCCTATAATCCCAGCGCTTTGGGAGGCCGAGGTGAGAGGATCACTTGAGGACAAGAGTTTGAGATTAGCCTGAGCAACACAGGAAGACCCCGTCTCTACAAAATAAATTTAAAAATTGGTGGGCATGGTGGTGTGCGCCTGTAGTCCAAACTACTTGGGAGGCTGAGGTAGGAAGATCACTTGAGCCTAGGAGGTTGAGGCTGCAGTGAGCTGTGATCACTCCACTGTACTCCAGCCTGGGTGACAGTGAGACTGTGTCTCAGAAAACAAACAAACAACAGAATTCGAGACAGTGCCAATAGAAGGAATGGATATTTTTCACTACCCAAAGCAGCACCGCCAAGCGGCACTAGAGAAAATAGAATCTTTTTGTTGAGACAGAGTCTAGCTCTGTTGCTCAGGCTGGAGTGCAGTGACACAATCTTGGCTCACGGCAACCTCTGCCTCCCAGGTTCAAGTAATTCTCCTGCCTCAGCCTTCCAAGTAGCTGGGATTACAGGCATGTGCCACCACACCTGGCTTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGCCTCGAACTCCTGACCTTAGGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGAGATTACAGGCATGAGCCACCGCACCCTGCCAAGAAAATAGAACCTCTATGAAATTAGGCTCTTCTGGAAAAATGGTTAAAATAGAGACAGTTTGCCCTATTTCAAATATTGCATATAATGCAAGAATTTATTACATCTTTTAATATGTTTCAGATTCCTAAAATGCAACTGCAGTGGTTATGTTATCACTGTTTTCTCTCTCTATGCCTCAGTTTCCAAATCTGTAAAATGGGAATGATTCTTACAGGCTTATAAAGCCATTGATGTAAATTGCTTTGAGCAATGCCTGCCAGAGTATCTATGCTAGGTAAGCATTTGCTGTTATTGTCATCATTTATTGATAAGGAAAACAGAGATCATGTCCTTGAAGAGAAGAAGGGTCAAAGACCAGAGTTTGAGAGGACTCCTACTGTCTGAGTTCTAATCTCGGATCTTCAGTTTCTAAGCTGTGTGACCTTAAGCACATTCTCCCACTCTTCAGAGCCTCAGTATGTCCATCTGTCCAATGAAGCTGATATCTACCTTACAGGCTGTGTGAGGTCCTTCATATGTAAAGTGCCAGTTGTGATAAATGATAAGACCCTTGACCTTTGGCCCAGGTCCCTAAAACTGACCCTGACCTCCTTCTCTCTCTCTCTGCATCTCCATCTGACAG
Seq C2 exon
TGGAGGGCATCGTGGGGCTGGAACAGGTGAGCAGCCTGGGCGACGGCCCACCAGGTGGCCGCCCCCGTCGGGGTATGTTCCGGACAGTGGGACAGCTCTACAAGGAGTCCCTGAGCCGCCTCATGGCCACACTCAGCAACACCAACCCCAGTTTTGTCCGCTGCATTGTCCCCAACCACGAGAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105357:ENST00000601313:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=NA C2=0.268
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(9.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATGGGGGCTTCCAGC
R:
CTCTTCTCGTGGTTGGGGACA
Band lengths:
286-2266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains