MmuINT0103338 @ mm10
Intron Retention
Gene
ENSMUSG00000030739 | Myh14
Description
myosin, heavy polypeptide 14 [Source:MGI Symbol;Acc:MGI:1919210]
Coordinates
chr7:44634359-44637879:-
Coord C1 exon
chr7:44637765-44637879
Coord A exon
chr7:44634547-44637764
Coord C2 exon
chr7:44634359-44634546
Length
3218 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
ATCTCTTATGCCCTCCACAGTGG
3' ss Score
7.97
Exon sequences
Seq C1 exon
GTTGACTACAAAGCCAGTGAGTGGCTGATGAAGAACATGGACCCACTGAATGACAATGTGGCCGCCTTGCTTCACCAGAGCACGGATCGTCTCACAGCTGAGATCTGGAAGGATG
Seq A exon
GTAAGGTCCCTCTACCCAGGGTCTGTCCCCAGATGCCATGTCCCTTCCTACCCCCAGTGGGAGCAGGAGCCAGAGGCTAGAGGGGGAGGGAGGAATGGTGGGTATGGATGAGTGGGTAGGTGGGTGGGCCAGTGGATGGATGGATGGATGGATAGATAGATGGATGGATGGATAGACATATGGATGGACTGATTGGTGGATGATGGATGGGCAAGTGTATAGATAGGTGGATGAGGGGGTTGGTAAGTGAGTGGGTGAGTTGGCGGATGGACAGGTTAGCAGATGTATAAATGGACAGGTAGAAGAATGGAAGGCTGGATGTGTTGAAGAGAGGGTGGATGGGTGGGTGGGCGCATGGATGGTTGGATTGGTGAGTGAAAGGATGTGTTGGTAGATGGGTAAGCAGGCAGATGTAGATGGATGGGTGGAAAGCTAGGTGGGTTGAGGAGTGGGTTGGTGTATTGATGTGTTGTTATCTAAACTAACATCTTACACAAGGATAAGAAATAATACAGGCCTACCCATGGGCATATTAGTGTCAATGATCGTTTTTAGTAATAGTCTCCTATGCAATCAGACCAGAAAAAATAAGTGCAGCCATCCCTTGGGATGCACAGGACACTAGGCCACTCAAAGACTTACCTAGATACCCTAGTATTCACATTTGACACACACCCCTTCCTGTATACGTTTTCCTCTCTGTCCCTATAGGCTGAATCAGCCCTCATCCTATTTATTTAACAAGATGCAAATGATATGTAAATAGCAGTTACACTACTACACAGACTATGGCAGGAAAAGCCTGTGTTGTGTTCAGTAGAGACTCTTTTCCTCGGAATAGTTTTAATTAGTTGTTCAACCGCAAGCGCTGAGTCTGAATATATGGAAAGCTGATTTTATATAGATATTTTTAGCCAAGCATGGTAGTGCAAGCCTTTAAATCCCAGCACTCGGAGGCGGGTGGGGCGGGGGAGGCATCTCTGTGAGTTTGAGCGCAACCTGTTTTACATTATGAGCTCTAAGGAAGCCAGGGCTACAGAGAGGCCCCGACTCAAACAAACAAACAAACAAACAAACAAACAAACAAGTTGAGCCATCAGAGAACCCGAGTTCAGGATCGACACCCATGTCAGGTGGCTAATAAGCACCTACAACCACTCTTAACTCCAGGGGCTCCAACACCTCTGTCCTCCATGGGTACCTCAATACACACACACAGAGACACAAAATTACAAATAATCAGAATAAATCCTTTCTAAAGCTTGGTGTAGTTCATGGGCACTGTGGGCACATGACCCCTTACCCATCTGTCCCAGCCCCTGTGTGCCTGGCTCTGAGCGACAGTCCTGATCTTCTGGAGCTGATGCTAAACCAATCTCCCCCCTGAGGAGTCACTAACAAGGCTGGCACAAAGGGCAGGAAGGGGAAGAGTAGGGACTTGGTCCAGTTTACATCCATCTCGCGCTTGGCCACCTTGATCCCAGAATTGGACATGCAGCCAGGGGTCAGGGGCGGGCAAATGAGACAGTCCTTGTCTCAGTTAGGGTTTTACTGCTGTGAACAGACACCATGACCAAGGCAACTCTTATAAGGACAACATTTAATTGGGGCTGGCTTACAGGTTCAGAGATTCAGTCTATTATCATCAAGGCAGGAACATGCCAGCATCCAGGCAGGCATGGTGCAGGAGGAGCTGAGAGTTCTACATCTTCATCTGAAGGCTGCTAGCAGACTACTGGCTTCCAGGCAGCTAGGATGAGGGTCTTATAGTCCACATCCACAGTGACACACCGATTCCAACAGGGCCACACCTTCTAATAGCACCACTCCCTGGGCCAAGCATGTACAAACCATAACAGCCCCCAACAGGTGGGGTGGATATGTCAAGTTAGTTGCTGCACTTCTGGGCTTCCAGGGCAAAAAGGACTAGCTAAGACAACAGTTGCAGACTTGGGTTCTAAGGTGTTCTGTCATTTTCTTTGGTACTGACTCCTCACAGATGCTCTCGGCACCGATATTAGGGTGAACAGGACTTGATTAGGTCACAGGCAACAGCTGAGTCCTGCCTGCTTGCTCTGTGCTGACTAATGCTCTCTCTCTCTCTCTTCCTCTCACCTTTCCCTCTCCCATCTCCACACATCTCTCCCACCACTGCCATCTTCCCCACCCCTCATCTGCCCATCCCCAGAACAAGGGGGTCTCCAACAGTTCACTTTACTTGGCTCCTTCCCATCGCCGTCCCCTGGACCTGCAGGGAGACTCGGCTCTGGCGCTTCTCCTCCAGGGGTTGGGTCTCTCTGTGCACCCACGGGTGAGGTTGCAGAATGCAGTTGGGAGGGACTGTGGGGAGGGGTCCTGGGTGGAAATGCTGGTTCCCCTCCTCTCTGCATGAGGTCTCTCCCTCCTTGCTGAGCCCTTGGTGGTTCTAGAACCTTCTAGCTTGACCACTATTAAAAATACAGAGAAGGGGCCAGCAAGATGGGTCAGCACATACAGGGGTGTGTGCCGCCAAGCCTGACATTCTGAGGTCCATCTCCCAGAACCCACATGGAGGGAGGAGAGAACTAATTCCCACAAACTGTCTTCCACACATGCCTTACACGCACGTGCACACTCACATGAACACACACACAGTGTGATAACATTTTAAGAAAGACATTTCCTGAGCACCTAATGTGCAAACAAGGAAACAAGTACAGAGAGGTTATGTCGCTTGCTCAAGGTCACACAGTCAGTAAGTGGTAGAGTCGGGATTTGAACCCAGAACCTTTCCAGCTCTTTCTTATGCTGTAGAAACCTAATCAATGAGATGTGTCATTTTGAAAATGACTGACAGCATAGGGGCTCCAGAGAGACTTGAAATTGGGGACTCCCAGCAGTGGTAGGGCACATGAGGACACATTACCAGGTTCTGGCCCTGGGTCTTTGCTTTCTGAGCTATGTGACCTTGAGGCCAGTTGCTGCATTTCTGACTCTCTGTCTGCCTGTCAACTGCAACCCCCAGCCCCCAGGCCAAGTAGCAGTGCTCTGTGTGACATGCCAGGTCCTATAAACAGCAAGATACTCCACCTCAGCTAACTCCATTCCTTAAAGATGATTCTAAGGAGCTGGGTGTGGTGGCTCCAGCCCAGCACTCTGGAGTCTGAGGCAGGAGGATGGCATGAATGTATGGCTGGCTGACCTTGATCCCTTTTGTGCATCTCTTATGCCCTCCACAG
Seq C2 exon
TGGAGGGCATCGTGGGGCTGGAGCAAGTAAGCAGCCTTGGAGATGGCCCACCGGGAGGCCGCCCCCGCCGTGGAATGTTCCGGACTGTGGGGCAGCTCTACAAAGAATCCCTGAGCCGCCTCATGGCCACGCTCAGCAACACCAACCCTAGTTTTGTCCGCTGCATCGTTCCCAATCATGAGAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030739:ENSMUST00000048102:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.256
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.5=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(13.2=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types