RnoINT0096389 @ rn6
Intron Retention
Gene
ENSRNOG00000020014 | Myh14
Description
myosin heavy chain 14 [Source:RGD Symbol;Acc:1306821]
Coordinates
chr1:100634932-100638511:-
Coord C1 exon
chr1:100638397-100638511
Coord A exon
chr1:100635120-100638396
Coord C2 exon
chr1:100634932-100635119
Length
3277 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
ACTTCTTCGTCCCTCTACAGTGG
3' ss Score
8.92
Exon sequences
Seq C1 exon
GTTGACTACAAAGCCAATGAGTGGTTGATGAAGAACATGGATCCATTGAATGACAATGTGGCCGCCTTGCTTCACCAGAGCACAGATCGTCTCACAGCTGAGATCTGGAAGGATG
Seq A exon
GTAAGGTTCCCGTCCCAGGGTGTGTCACAGGTGCTTTCCCCCTTCCTACCCACAGGGAGCAGGAGCTAGAGGGGGAGGGAGGAATGTTGGGTACCTGGTTGAATGGGTGGGTGGATGAGTGAGTGGATACATGGATGAGCGGTGGTGGGTGAGCCAGTGGACAGATGGATGGACTGATTGGAGGCTGATGGATGAGCAGGATGGGTGAATGGATGGATGGACAGATGGATGGATGGATGGGTGGACAGATGGATGGATGGGTGGACAGATGGATGGATGGGTGGACAGACGGATGGACAGATGGACGGATGGATGGATGGACGGACGGATGGACGGATGGATGGATGGATGGATGAATGGATGGATGGATGGGTGGGTGGGTGGGTAGGTGAGTAGAAAGCTACATGGGTTGATGAGTGGTTTGGTGGGTGGATGTGTTGTTTTCTTAAATTAGCATCTTACACGAGGATAAGAAATACAGGCGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAAAAAAAAAAGAAATAATACAGGCATACCCATGGGCATATCGTTGTTGATGATCATTTTTAGAAAAATAAGTGCAGCCATCCCTTGGGACACACAGGACACTAGGCCACTCAAAGACTTACATCAATACCATAGTATTCACATTTGACACACACACCTTCCCAGATACTTTTTCCTCTCTATCCCTATAGGCTGAATCATCCCTCATCCTATTTATTTAACAAAATGCAAATGATATGTAAATAGTGGTTACACTACTACACAGAACATGGCAGGAAAAAGCCTGTTTTGTGTTCAGTATAAACTCTTTTCCTCAGAGTATTTTTAATTAGTTGTTCAGTCGCAAGCGCCAAGCCTGAATATATGGAAAGCTGATTTTATGTAGATATTTTTAGCCAGGCATGGGGTGCAAGCCTTTAATCCCAGCACTCGAGGGTGGGTGGGGTGGGGGAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACACACACACACATACACACATGCACACTCACACGCACACGGAGTTAAAAATAATCAAAATAGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACCGGCTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGACTCACAACCATCTTTAATGGGATCTGACGCCCGCCCTCTTCTGGTGTGTCTTAAGACAGCTACAGTGTACTCATATGTAATAAATAAATAAATCTTTAAAAAATAATCAGGGGTTGGGTGTTTAACTCAGTGGTAGAGTGCTTGCCTAGCAAGCACAAGGCCCTGGGTTCGGTCCTCAGCGTAGTTCATGGGCACTATGGACACATGACCCATCTGTCCCATCCCCTGAGTGCCTGTCTCTGAGTGACAGTCCTGCTCTTCTGGAGCTGATGTTAAATCAATCTTCTCCCACTAGAAACCATTAGCAAAGCTGGTGCAAAGGGCAGGGGAAGGGGAAGGGTAGGGACTTGGTCCAGTTTACATTCATCTCACTCTGGCTGCCTTGATCCCAGAATCAGACATGCTGCACCCTAGCAACCATCAGGGGGAAGGGGGGGGGACAAATGAGATAGTCTGTGTCCTAGAGTTTTACTGCTGTGAAAAGACACCATGACTGAGACAACTCTTATAAAGACAGCATTTAATTGGGGCTGGCTTACTGGGTCAGAGGTTCAGCCCAATATCATCAAGGCAGGAACATGGCAGCATCCAGGCAGCCACGGTACAGAGGAGCTGAGAGGTCTACATCTTCATCTAGAGGCTGCTAGCAGGATGCTGACTTCCAGGCAGCTAGGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGGGGCCAAACAATTGCCACAAACTGGTCTGTCCTCAAGCCCCTCGTCCTCTATAAATGCCTTACCAACATGCGCACACTCACGTGGACACACACGACACAGGTGTAATAACATTTTAAGAAAGGCATTTCTGGAGAATCGGCCAGCAGCTTAAGAGCACTGACTGCTCTTCCAGGTTCCTGAAGTTCAATCCCAGCAACCCACAGGGTGGCTGCATAATATCTTAATGAGATCTTATGCCTTCTTCTGGCCTGCAGGCATACATGCAGGCAGAAAGCTGTATACATAATAAGTAAACAATTTTTTAAAAAAGGGCATTTCCTGAGCACCTAATGTGTAAACAAGGAAACAAGCACAGAGAGGTTATGCAGTTTGCTCAAGGTCACACAGCCAGTAAGTGATAGAGTAGGGATTTAAACCCAGCTCTTCCTTATGCTGTAGAAACCCAGTCAATGAGATCTGATGTTTTGAAAATGACTGACAGCATAGGGACACCAAAAAGACTTGAACCTGGGGAGAGTCAGCAGTGGCAGGGTACACCTAGACTCATTATCAGGATCTGGCCCTGGGTCTCTACTTTCTGACCTATGTGACCTTGAGGCCAGTTGCTGCATTTATGGCTGGCTGTCTGCCTGTCAACTGTACCCCAAGCCCCAAACCCAAGGAGCAGTGCTCTGTGCGACATGCTGGGCCCTGTAAACAGCAAGATGCTCTACCTTGGCTAACTCCACTCCTTAAAGCTGACTCTAAGAAGCTGGGTGTGGTGACTCCGGCCCAGCACTCTGGAGTCTGAGGCAGGAGGATGGCAGGATTTATGGCTGGCTGACCTTAATCTTTTTGTACACTTCTTCGTCCCTCTACAG
Seq C2 exon
TGGAGGGCATCGTGGGGCTGGAGCAAGTGAGCAGCCTTGGAGATGGCCCCCCGGGAGGCCGCCCCCGCCGTGGAATGTTCCGGACCGTGGGGCAGCTCTACAAAGAATCCCTGAGCCGCCTCATGGCCACGCTCAGCAACACCAACCCTAGTTTTGTCCGCTGCATCGTTCCCAATCATGAGAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020014:ENSRNOT00000027132:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.254
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.5=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(9.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]