HsaINT1026781 @ hg38
Intron Retention
Gene
ENSG00000112511 | PHF1
Description
PHD finger protein 1 [Source:HGNC Symbol;Acc:HGNC:8919]
Coordinates
chr6:33413736-33414109:+
Coord C1 exon
chr6:33413736-33413831
Coord A exon
chr6:33413832-33414040
Coord C2 exon
chr6:33414041-33414109
Length
209 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TCCCTCTTGCCCATGTCCAGGTT
3' ss Score
7.66
Exon sequences
Seq C1 exon
GTGGAACCTGAAAATGCTGCAGTGCCGGAGCTGCCTGCAGTGGTTCCATGAGGCCTGCACCCAGTGTCTGAGCAAGCCCCTCCTCTATGGGGACAG
Seq A exon
GTGAGACCAAGGCAGACTCTCTAGGAGCCAAGGATGCCCTCTTTCTTCGTGTTCCACCCTCAGTTCTCCCACGCCCTTCTCCACTCCAGTCTCTTCCCAACCTCTGCAGCGTTACCTCACCTGTTTGCCCCGTCCTTGCTTGTGAGTCTTCCAGGGGATGGCACAGTTTTCCTGTGTAAGTGTGTTTGCTCCCTCTTGCCCATGTCCAG
Seq C2 exon
GTTCTATGAATTTGAATGCTGTGTGTGTCGCGGGGGCCCTGAGAAAGTCCGGAGACTACAGCTTCGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000112511:ENST00000374512:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=PD(74.3=78.8)
A:
NA
C2:
PF0062824=PHD=PD(25.5=58.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTGAAAATGCTGCAGTGC
R:
CGAAGCTGTAGTCTCCGGAC
Band lengths:
158-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains