HsaINT1032155 @ hg38
Intron Retention
Gene
ENSG00000217576 | RP11-248G5.8
Description
NA
Coordinates
chr13:52167709-52170099:-
Coord C1 exon
chr13:52169987-52170099
Coord A exon
chr13:52169305-52169986
Coord C2 exon
chr13:52167709-52169304
Length
682 bp
Sequences
Splice sites
5' ss Seq
AGGGTATTC
5' ss Score
3.07
3' ss Seq
TCTTTTTTTTCTTTTTTTAGGGG
3' ss Score
12.21
Exon sequences
Seq C1 exon
GATCTGTAAATAACTGACGAAAAACCCATCTGTTTCTACGTAGTTGCTGTTGCCGACACAAAGAAGTCTTATGAACTCAATCCAAATAATTCCACTGCTATGCTGAGAAAAGG
Seq A exon
GTATTCAATAGCTACTTTTTTGTTGAGCTTGGACTGTAAATAGTAGATGTTTAATTTGTTGAATGAGTTCATTGTAAGCTTTATAAGTAGTAAAATTCTATATTTATACATTTTATAGCAGAGATATGATTCAATTTTAAATACAAAGTTATAGTTCTATTATTTTGTTAGCCATAGTATGTGATAGGAGATCTATACTTAACATATTTTAAAATAGTGATGATTGAAATAACTGCAAGGTATAGATGAAACTGAAGGATTTCACATTCCTTTTTTGTTTATCATTTGGAATTTACTGTATTTAACTGACTAGAGAACATCCTATCCTTCAACCAAGCTGAATAGGCCGCATTTAATGCTATGAAAGCTCTATATCTGTGTGCTTTATATCCCATCTTGTTTCTAAGTGTAACTTTATTCTTTAAGTAAGAAACTTCTTTAATTCCTTTGTATAATTATATTTTGGAATAAGCAAGTATGTACAATTAAAGTGAAATTCCTTCTGAAGCAAGTTCTAAAATTAAATTTTACTGGAAATTGTACTAGATGTTAACAGTATTTTAGAAAGTCTCTTGGCTTACTAACATATACTTAAAATAAATTTTTTCTTTCAACAATAGAAAATACTAAGATGTTTTTATTTAGAACTGCCTAAATGCCTTTCTTTTTTTTCTTTTTTTAG
Seq C2 exon
GGGCTGGCGGCATGGAGTCTTGCTCTGTCACCCATCCTCGAGTGCAATGGCACCATCTTAGTTCACTGCAGCCTTGAATTCCAGGGCTCGAGCCATCCTTCTGCCTCTGCCTCCTGAGTAGGTGGGACTACAGGCATGTGCCACCATACTGAGCTAATTTGTTAAACACTTTTTTTGTAGAGACGAGGTCTTGCTACGTTTCCCAGACTGGTCTCTGAACTCCCGGCCTCAAGTGATCCTACTGCCTTGGCCTCCCAAAGTACTGGCATAATAGACATGAGCCACTGCACCTGGCTCCTAAGTTCTTTTCTTGAATAATATCTTTCTTTTTTTTTATTTTTTGAGGTGGAGTCTCACCCTGTTGCCCAGGCTGGAGTGCAATGGCGTGATCTCGGCTCACTGCAACTTCTACCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAATAGCTAGGATTACAGGCGTGCGCTACCACGCCTGGCTAATTTTTTGTGTCTTTAGTAGAGATGCGGTTTCACCATGTTGGCCAGGCTTGTCTCGAACTCTTGACCTCGTGATCCACCCGCCTTGGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACCACGCCTGGCCAAGTAATATCTTAATATCATGCCATTGACATTTATCCTCTAATTATTTCAGAGGTGGCCTTCAGAAGAAGGCCTCTTTGGTAAAATTGCTATTGAGGATATTTCACTGAAAAACAAATTTATCTTTAAATTTAAATCCAGGAAAAATTTAAACTTTCAGGCTTCTATTTTTATCAGACAGGGTAAAAAATTTATAACTCAGAATATTACCCTTTCCCCTCTTTGTGTGATGGATTGCTTGGTTTTAGTTACTGATTATTTAAAATAATAAGTTATTCAAATCTAGGATTTTGATACAATAGTTCTTCTCTAGAATATAGTGTGTGTGTGAGAGTATATTTAAAATTTTTATTAAGGCCCATGGGGCAGCCTTTGAGGAAACCAGACCTTGGGGATCGCCAGGCAGGATTAGTGGCAGGAATTGAGAGAACAGAGCCCCACAGAGCTCCTCGGGGACCGTCCCCCAGTCACAAGAGTATCTCAAGGAAGTAGTCTTCTCCCACATCCCCCAAAGATAACTACCAGAGGGTCAGTTCTCTGAGCCCTTCTCAGTGTAGAAAAGACAAGTGTCAAAGCTTCCCCACTCACCCTGAGTTTGCCTTCTATGACAATACGTCGTTTGGCCTCACTGAGGCTGAGCAGAGGATGCTGGACCTCCCAGGATATTTTGGGTCAAATGAAGAGGATGAAACCACAAGTACACTTAGCGTGGAGAAGCTGGTGATCTAGACTGAGAATCAGCCTGAGCTTAACACAGCTGGGGTCTGCTACTCGCGTTTTGTAGACTTTTGTGTAACTATTTGTACCGTAGGACAGAATGTGAGGAGGAAGTAACACACACAGAGGAGGATGTGTGTGTGTGCATGTGTTTGAATTCACAAGGAAGAAATTATTTATCTTGAGCTTTTTCCTTTGTTATTCAGTTTTTATTGGTTTATTACTAATAATGATAATAAAATGTAAACAAGAGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000217576:ENST00000451298:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGTAGTTGCTGTTGCCGAC
R:
CAGTACTTTGGGAGGCCAAGG
Band lengths:
342-1024
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains