HsaINT1045494 @ hg38
Intron Retention
Gene
ENSG00000168026 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr3:39126261-39128488:+
Coord C1 exon
chr3:39126261-39126390
Coord A exon
chr3:39126391-39128333
Coord C2 exon
chr3:39128334-39128488
Length
1943 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTGTGTATTATTTCTAGGAGAGC
3' ss Score
-16.68
Exon sequences
Seq C1 exon
CCCAGGTTACCAGGCCAGATCGTGTCTCCACTTCTTAAACAAGTCGCCGTGATCTTGAATCCTGTAGTCAAAGCAGCACCAGCTCTGATCGACCCCCTGTATTTGATGGCTCAGGTCAGGTATTACTCAG
Seq A exon
GTGAGCGGGGGATCCTGACAGCCGGGTGGGGCCTTGCAAACACCTGATGTAGCTTTGTGTCTGCAGGCTCCTTGCCTAGGATACTACACACACACACACACACACACACACACACACACACACACACACACTCTCCTTGCCTGGGGTACTACGCACACACACACACACATGCATGCTCCTTGCCTGGGGTACTACACACACACACACACACATGCATGCTCCTTGCCTGGTGTACTACACACACACACACACACACACACGTATGCACACACGTGCACACACACACAGGCACATGATCCTACAGGCCTGCCCACTCCCAGCCTCCATTCCCTAGTAAGCTTCCTGACCTCTCACCAGCAGGGGTCTCTCCCACCTAGGCCTTTGTGGATTTACTCATTTGATCTGTGCTGGTAATAGTTATTGAACTTCTTCTGAGATACAGTAGTACCAAAAATAGGCAAAAATTCCCTCATGGAGCTTGCATCTAGTAAGGGGAAATTGACAACTGAATACAAGCTCCACGAGGGAGCACATCGTATTTTTTTGCTAGAACATGGTAATGCTATGGAAGAAGCTGAAACAGGGAAGTGATGCAGGGGTGGCAGGGTTGCGGTTTTGAAAAGGTATCCAGAAAGAACTTGTGGAGAAGTGAGAACCCTGTACCATGAGGCCTTCAGAGCCTCCAGGGGCCCTTTCACCTTCTCCCTTCTCAAGGCCCAGACCCTGGAGAGAAAGGGAAGGAGAGGGAAACTCTTCCATGGGTGCTCTATTGTCCTATCTGATGCAGAGTCCTCCCCTGAAGTACTGTCTCCCTGTGGCCTCTCACCCAATCCTGCCTGCCTGGAAACCAGGCTGATCTGTGGTGTTCTGGGGGTGTCCAAAGGGATCAGAATACTGTGGCCATTTGTCTGTCTTCTGGCATTGCATCGTGTGGGTTGCACTCCTGCTGAGAGCTTTCCTGTCTTCATCCTTAGTCCTCCCTATGTTCATTTGGGTGCCAGGTTTCCCCACAGCTTCAAGGTATCCTGGATACAAGGCCAGGGTGAGAGAACTTCCCCTGGGTGCCGGCATCTGCCAGCAGATTTGGGCCCAAAGCAGTCTCCAGCTGTGTAGGTTGCCATGGTGACCTCTTCACATTTCCACAGCACATAAGAAGGAGCAGGGAGCTTGGGACCCAGAAACAGGTGCTCCCTACCCACCAGGTTATGGATCCCAAGTAGGAGTTGTTGAGAGACCTGACTGCGAGGGAAGAGAGTGCCCCTACCAACTCATCACACCCAACCCCTAGGCTGCTGCTACCACCCTGAAAGTGCCAGCCTGTCTGCAGGGAGGCCCCGCAGCCCTCAAGCCCCAGGGGGTTCAGAGCTGAAGCTCAGGAACCCAATAGGCCTGGACGTAAATGCCAACTTCGCCCCTTCCAAGCCGAGTGGCTTATATCACTGGAGCCCCAGGTACCACATCTGAAAAGACAAGAACAATAGCACCAACCTTGCAGGGCTGGGCAAGTAATAAATCAGACTTTCTAAAGTGTTTTGCAAGTATTGAACATAGAGCAGGAGCTTCTTAAATTGTAACTATTATAGTTGCTGTTACTACTAGGTTTTGTTTGCTCTTAGGTGTGGGAATTGAGACTTAATGTGTTCCCCTGAGCTTCTGGATGGAGCTGTGAAGTGACTTAGCTATCTCCCTGAGGGTTACAGAGACAAGAAGGGTGTTGCACTGAGGTTTGAGTTTCCTGTCGTTTGTCTGAGTCAAGGAAACAACTGTGTAGTCTTAATTTTAGAAATGGACCCCTGAGTGAAGCAGAACAAAACTGGCTAAAATACTCAATTTTGTATATTTCTGGGGAACAGGACATGTAAAATTCATTCTGCCCTTGCATATCAGGTCTTAGGAGCCCTTGGGAACCCTGCATGTAGAGGTTTGTGTATTATTTCTAGGAG
Seq C2 exon
AGCTAGAGAATGCCCAGAGCATCCTGCAGCGTTGCCTGGAGCTGGACCCCGCCTCCGTGGATGCCCATCTCCTCATGTGTCAGATCTACTTGGCTCAGGGCAACTTTGGCATGTGCTTCCACTGCTTAGAGCTGGGTGTCAGCCACAACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168026:ENST00000431162:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.064
Domain overlap (PFAM):
C1:
PF128952=Apc3=PU(2.3=4.5)
A:
NA
C2:
PF128952=Apc3=FE(60.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACCAGGCCAGATCGTGTCT
R:
CTGGAAGTTGTGGCTGACA
Band lengths:
279-2222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains