MmuEX0001524 @ mm9
Exon Skipping
Gene
ENSMUSG00000027880 | 4930443G12Rik
Description
RIKEN cDNA 4930443G12 gene [Source:MGI Symbol;Acc:MGI:1921936]
Coordinates
chr3:108897126-108905773:+
Coord C1 exon
chr3:108897126-108897213
Coord A exon
chr3:108901494-108901605
Coord C2 exon
chr3:108905615-108905773
Length
112 bp
Sequences
Splice sites
3' ss Seq
CATTTAAAATTTCATTTCAGCAT
3' ss Score
6.41
5' ss Seq
ACTGTAAGG
5' ss Score
5.19
Exon sequences
Seq C1 exon
GCGTAATAGATGCTTCAGAAATAGTCGCTGCCGTGAGATCATTGGGAATCCACATTTCTCTCTCTCAGGCCAAAGACATCTTGAAAAG
Seq A exon
CATGGATTTTGACGGGTCGATGACAGTAGACTGGGATGAATGGAGAGATTTCTTTTTCTTCCACCCTGCAAAAAATATCACTGACATTGTTCGTTTCTGGAAGCATTCTACT
Seq C2 exon
ATAATTGATATAGGAGAGAGTATAAGTATTCCAGATGAATTTACAGAACAAGAGAAGATGTCTGGAGAATGGTGGAAGCGGTTAGTAGCAGCAGGAATAGCGAGTGCGATCACACGGACATGCACGGCACCTTTGGAACGCTTGAAAGTCACGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027880-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102234=DUF2181=PD(32.9=93.3),PF134991=EF-hand_7=FE(44.6=100)
A:
PF134991=EF-hand_7=PD(27.7=47.4)
C2:
PF0015322=Mito_carr=PU(35.1=62.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGATGCTTCAGAAATAGTCGCTGC
R:
CTGCATCGTGACTTTCAAGCG
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: