MmuEX0002636 @ mm10
Exon Skipping
Gene
ENSMUSG00000091345 | Col6a5
Description
collagen, type VI, alpha 5 [Source:MGI Symbol;Acc:MGI:3648134]
Coordinates
chr9:105861830-105864835:-
Coord C1 exon
chr9:105864146-105864835
Coord A exon
chr9:105862749-105862845
Coord C2 exon
chr9:105861830-105862062
Length
97 bp
Sequences
Splice sites
3' ss Seq
AAGAATTCCACTGTCTCCAGGTG
3' ss Score
6.61
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
ACTGACCTCTGTCTTAGGAGACAGAGTGGCTGTCCTGACCTACTCTCCCCCAGGCTATCTGCCAAACACTGAAGAGTGCCCAGTCTACCTGGAATTCGATTTGGTCACTTACAACACTGTACATCAAATGAAGCATCATCTCCAAGAGTCTCTTCAGCAGCTCAATGGTGATGTTTTTATTGGGCATGCCCTTCAGTGGACAGTTGACAATGTCTTTGTAGGAACCCCCAATCTGAGGAAAAACAAAGTTATCTTTATAGTAACTGCAGGTGAAACCAACCCTTTAGACAAAGAAGTTTTAAGGAATGCATCTCTGAGAGCCAAGTGCCAAGGCTACTCCATATTTGTATTTTCCTTTGGTCCGATACACAATGACATGGAGTTAGAAGAATTAGCAAGCCACCCTCTGGATCATCACTTAGTCCGGCTTGGCCGGGTACACAGGCCAGATTTGGACTATGTCATCAAGTTCATCAAGCCATTTGTTCATTCGATCAGAC
Seq A exon
GTGCTATCAACAAATATCCCGGCAGAGACCTGCAAGCCAAGTGTGATAATCTCACCTTCCCTGGCCCAGAGAATGCTGGCACAGAAGACAGTGCATT
Seq C2 exon
ACTCATCCCCGAGGTGTACAGAATCGAGGCAGGAGAGAATGAGCTGTCTGGAGACTCTGGATCTCAGGAGCAGCATTTCTTCCTCCTAGGGAACAGTCATGGCAACCATTCAGAAAGCACTGCTGATCTGATGCGGCAGTTGTACCTGCTCCTCTCCTCCGGGGAACTGATGGTGAATGATAAGGAAGAGCCTTGTTCCGCAGAGACCCCAGCTCCAGTGAACAGCAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091345_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=0.323 C2=0.477
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=78.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGTACACAGGCCAGATTTG
R:
ATGGTTGCCATGACTGTTCCC
Band lengths:
176-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types