BtaEX0000829 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MFK0]
Coordinates
chr1:153531717-153576197:-
Coord C1 exon
chr1:153575992-153576197
Coord A exon
chr1:153545193-153545289
Coord C2 exon
chr1:153531717-153532097
Length
97 bp
Sequences
Splice sites
3' ss Seq
ACTGTCCACTCTCTCTCTAGGTG
3' ss Score
14.12
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
ATTTACTCCTGAACCTTATGAGATTTCTTCAGGAGAGAACATCATTGGCCAGGAATTGAGTGCTCTGAGAGATTCATCTTTTGTATTGGAGGACAATGGAAGCGACCATTTGGTTTATGTTCCAAGCCAGATGCTTATGCCACAGAAATTAATGACTAAGTATGAAAAAGATTGGAATTCTGAAGCAACTGCAAGTCTCACATCTG
Seq A exon
GTGGCATCAACAAATACCCCCCTGCAGACATGAAACCCAAATGTGTTAACATCACCTCTCCCACTCCAGAGAATAATGGCATAGGAAACACTGTATT
Seq C2 exon
ATGGTGAAGACACAAGATGATCATAGCAGAAAAGAATATAGCTCCATTGGCATGAGAAATTCCACACGGTTCTAACTAAGAAGTATAAATCATCTATTAGAAGTGGAGTCATAAGTGGCAGGAATTTTTCACAACTAATAACATGTTAGATTTGTTCTGTTCCGAATCTGAGGGAAAGACTTCTCTGAGTGAAGACATCAATGAGCAGACCCAAGAAACTAGGAATGATTTCATTTCTCCTGAGAACTGGGATAACTGACTTTGAAGAGTTAACTGAATCCTTTCTTTGACAACTCTGTATGAGGCATCAATTGTAATGATGCACCTGCCTACAGGATATTTTTGTCATCATTTTTTATCGTATCTGTATCTCACATTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021906_MULTIEX1-2/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.348 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAGGACAATGGAAGCGAC
R:
ATTTCTCATGCCAATGGAGCT
Band lengths:
181-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development