BtaEX0000828 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MFK0]
Coordinates
chr1:153531717-153576197:-
Coord C1 exon
chr1:153575992-153576197
Coord A exon
chr1:153546607-153547296
Coord C2 exon
chr1:153531717-153532097
Length
690 bp
Sequences
Splice sites
3' ss Seq
CTTGGGTTATTCTGTTGCAGGAC
3' ss Score
8.98
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
ATTTACTCCTGAACCTTATGAGATTTCTTCAGGAGAGAACATCATTGGCCAGGAATTGAGTGCTCTGAGAGATTCATCTTTTGTATTGGAGGACAATGGAAGCGACCATTTGGTTTATGTTCCAAGCCAGATGCTTATGCCACAGAAATTAATGACTAAGTATGAAAAAGATTGGAATTCTGAAGCAACTGCAAGTCTCACATCTG
Seq A exon
GACATGAAAACCTTGGCAGAAAAGAAGAACCAGGTCTTACTTATGAAAGTAGAGATGCCTCTCTTCAAGAATATTACATGGATGTGACTTTTCTCATAGATGCTTCCAAAAGAATAGGAAGTGATGAGTTTAAGGAAGTGAAAGCTTTTGTAACCTCAGTGCTTGATTATTTTCATCTGGCCCCAGATCCACTGACCTCCACCTTAGGAGACAGAATAGCAGTCCTGACCTACTCTCCTCCAGGCTATATGCCCAACACAGAAAAATGCCCCGTCTACCTAGAATTTGATTTGGTCACTTATAACAATATACACCAAATGAAACATCATCTCCAAGACTCCCTTCAGCAGCTCAATGGAGATGTTTTTATAGGCCACGCCCTTCAGTGGACACTTGACAATGTCTTTGTAGGAACTCCCAACCTGAGGAGAAACAAAGTTATCTTTGTTATATCCGCTGGTGAAACCAACCCTTTAGACAGGGAAGTCTTAAGAAATGTATCTCTGAGAGCCAAGTGTCAGGGCTACTCCATATTTGTGTTTTCTTTTGGTCCTCTACACAATGACAAGGAATTAGAAGAATTAGCCAGCCACCCACTGGATCATCACTTAGTCCAGCTTGGCCGAACCCACAAGCCAGATTTGAACTATATCATCAAATTTATCAAGCCATTTGTTCATTCAATCAGAC
Seq C2 exon
ATGGTGAAGACACAAGATGATCATAGCAGAAAAGAATATAGCTCCATTGGCATGAGAAATTCCACACGGTTCTAACTAAGAAGTATAAATCATCTATTAGAAGTGGAGTCATAAGTGGCAGGAATTTTTCACAACTAATAACATGTTAGATTTGTTCTGTTCCGAATCTGAGGGAAAGACTTCTCTGAGTGAAGACATCAATGAGCAGACCCAAGAAACTAGGAATGATTTCATTTCTCCTGAGAACTGGGATAACTGACTTTGAAGAGTTAACTGAATCCTTTCTTTGACAACTCTGTATGAGGCATCAATTGTAATGATGCACCTGCCTACAGGATATTTTTGTCATCATTTTTTATCGTATCTGTATCTCACATTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021906_MULTIEX1-1/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.037 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
PF0009223=VWA=WD(100=77.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAGGACAATGGAAGCGAC
R:
TCCTAGTTTCTTGGGTCTGCTCA
Band lengths:
345-1035
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development