GgaEX7001925 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NWS8]
Coordinates
chr2:42173441-42175947:+
Coord C1 exon
chr2:42173441-42173531
Coord A exon
chr2:42174206-42174877
Coord C2 exon
chr2:42175913-42175947
Length
672 bp
Sequences
Splice sites
3' ss Seq
TATTGGTTCTTCCTCTCTAGATA
3' ss Score
9.41
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
ATTGATGATACTGGAAGATTTCAATTATTTGTTTGGGAAAGACAACAGGATGAAAATTTGGAGAACATCACAAATTGTACACTTTGCTTTG
Seq A exon
ATAAATGCAAGCCCAGTACCAACTGCAAAGTGCCCATTTCTCCACCTCTTCTGATGGATATGGATATTACTTACATCATGGACAGCTCTCGCAGCATCAGCAGTGAAGATTTTCAGAGAGCCAAGGACTTTGTGAGCAACATGATAGATCAGTTTGTCATTGCTGAACAGCCAAGTGAATCTTTAGGAGGCACCAGAGTGGCATTGGTACAGCAGGCTCCCAGAGGCTTCCTACCTGACAGAAACAAAATCCCTGTGGCCTTGGAATTTGATCTAGAAACATATAACAATAAAGATTTGATGAAGAAACATATCCAGGAGTCTGTTCACCAACTAGAAGGGCCATCAGCCATTGCTTCTGCATTACAGTGGACAGTTGAAAATGTATTTTTTAAAGCTCCCAGACAAAGAAAACACAGGGTCGTATTTGCAATAGTTGGAAGCAAAACAAGCACACAAGACAGAGAGAAGCTAAGAGAGATTTCACTTGGAGTCAAGTGCCAAGGATTTACCATGTTCACTCTTGCGCTTGGCAATGATCTGAGCGACAGTGAGCTGATGGAACTATCAAGCTCTCCCACAGATCAGCACTTATTGATATTGGGTAGGACTTCAAAGTCTGAGATGATATATGCTCAGAGATTTGCCCGGGCGTTTCTAAATCTGCTACAAC
Seq C2 exon
ATAACAGATATTTACAGTTATCTCCAAACATAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011567-'47-53,'47-50,48-53=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=PD(12.8=74.2)
A:
PF0009223=VWA=WD(100=86.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]