RnoEX0023497 @ rn6
Exon Skipping
Gene
ENSRNOG00000010663 | Col6a5
Description
collagen type VI alpha 5 chain [Source:RGD Symbol;Acc:1565804]
Coordinates
chr8:114545389-114553901:-
Coord C1 exon
chr8:114553808-114553901
Coord A exon
chr8:114548327-114548983
Coord C2 exon
chr8:114545389-114545485
Length
657 bp
Sequences
Splice sites
3' ss Seq
ATCTCTCTGTGTGTTTTCAGACA
3' ss Score
10.32
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
TTTGATGACACTGGGACATTTCAGGTGATTCCAGTTCCTCCAGTTGGAGATTACGAGCCACTGGAAAAGCTTCGACGCTGCACACTTTGCTATG
Seq A exon
ACAAGTGTTTTCCAAATACTTGTGCAGAAGAGCCTTTCTTTCCTGAGAATTCCTACATGGATGTTGCATTCCTCTTAGACAATTCTCGAAACATAGCCAGTGATGACTTCCAAGCTGTGAAAGGGCTGGTGAGCTCAGTGATTGACGGCTTCCACATCACTTCAAACCCTTCAACCTCTGAGTCTGGCGACAGGGTTGCTTTGCTGAGCTATTCTCCCTCAGAGAATTCCAGAAGGAAGGGCAGCGTGAAGACAGAGTTTGGGTTTACAACCTTTGACAGCGAATCAATCATGAAGAACTACATCCACACTTCCCTCCAACAGCTCAATGGAGATGCCGCCATTGGTCTTGCCCTGGAGTGGGCCATGGAGGGTCTCTTCCTGGGAACCCCCAATCCAAGAAAGCACAAGGTCATCATTGTGATTTCAGCTGGAGAAAACCACGAGGAGAAGGAATTTGTGAAGACGGTGGCTTTGAGGGCCAAATGTCAAGGCTATATCATATTTGTGGTTTCTCTGGGCTCCACACGAAGAGATGAGATGGAGGAACTAGCTAGTTACCCACTCGATCACCATCTGATACAGCTTGGGAGAATGGACAAGCCAGAGCTGAGTTATGTTGTGAAATTTCTGAAGCCCTTTGTATACTCGGTCAGAC
Seq C2 exon
GCGGATTTAATCAGTACCCGCCGCCACAGATGCTGGAGGACGACTGCAGGCTTGTTGATTCAGAGAGGGGGGACGTGCTGCACAGAAGAAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010663_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.091
Domain overlap (PFAM):
C1:
NO
A:
PF0009223=VWA=WD(100=81.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGACACTGGGACATTTCAGG
R:
CTGAGGCTTCTTCTGTGCAGC
Band lengths:
190-847
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]