MmuEX6068414 @ mm9
Exon Skipping
Gene
ENSMUSG00000091345 | AC119951.1
Description
collagen, type VI, alpha 5 [Source:MGI Symbol;Acc:MGI:3648134]
Coordinates
chr9:105780880-105785017:-
Coord C1 exon
chr9:105784924-105785017
Coord A exon
chr9:105783753-105784409
Coord C2 exon
chr9:105780880-105780970
Length
657 bp
Sequences
Splice sites
3' ss Seq
ATCTCTCTGTGCATTTTTAGACA
3' ss Score
8.4
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
TTTGATGACACTGGGACATTTCAGGTGATTCCAGTCCCCCCAGTTGGAGATTATGAGCCACTGGAGAAGCTTCGGCGCTGCACACTTTGCTATG
Seq A exon
ACAAGTGTTTTCCAAACACCTGTGCAGAAGAGCCTTTCTTTCCTGAGAATTCCTACATGGATGTTGCATTCCTCTTAGACAATTCCAAAAACATCGCCAGCGATGACTTCCAAGCCGTGAAAGCGCTGGTGAGCTCAGTGATTGACAGCTTCCACATCACTTCAAACCCTTCAGCCTCAGAGTCTGGTGACAGGGTTGCTTTGCTGAGCTATTCTCCCTCAGAGAGCTCCAGAAGGAAGGGCAGGGTGAAGACAGAGTTTGCCTTTACAACCTACGACAACCAATCAATCATGAAGAACTACATCTACACTTCCCTTCAACAGCTCAATGGAGATGCTACTATTGGCCTTGCCCTACAGTGGGCCATGGAAGGTCTCTTCCTGGGAACCCCCAATCCAAGAAAACACAAGGTCATCATTGTGATTTCAGCTGGAGAAAACCATGAGGAGAAGGAATTTGTGAAGACGGTGGCTTTGAGGGCCAAATGTCAAGGCTATGTCGTATTTGTGATATCTCTGGGCTCCACACAAAGAGATGAGATGGAAGAATTAGCCAGCTACCCACTCGATCACCATCTGATACAGCTTGGGAGAATGTACAAGCCAGATCTGAATTATATTGTGAAATTTCTGAAGCCCTTTATATACTCGGTCAGAC
Seq C2 exon
GCGGATTTAATCAATACCCACCACCCACGCTGAAGGACGACTGCAGACTTGTTGAGTTAGAGAGGGGAGACACACTGCCCCATGGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091345-'35-35,'35-34,36-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.161
Domain overlap (PFAM):
C1:
NO
A:
PF0009223=VWA=WD(100=80.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: