MmuEX6068414 @ mm10
Exon Skipping
Gene
ENSMUSG00000091345 | Col6a5
Description
collagen, type VI, alpha 5 [Source:MGI Symbol;Acc:MGI:3648134]
Coordinates
chr9:105878550-105882687:-
Coord C1 exon
chr9:105882594-105882687
Coord A exon
chr9:105881423-105882079
Coord C2 exon
chr9:105878550-105878640
Length
657 bp
Sequences
Splice sites
3' ss Seq
ATCTCTCTGTGCATTTTTAGACA
3' ss Score
8.4
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
TTTGATGACACTGGGACATTTCAGGTGATTCCAGTCCCCCCAGTTGGAGATTATGAGCCACTGGAGAAGCTTCGGCGCTGCACACTTTGCTATG
Seq A exon
ACAAGTGTTTTCCAAACACCTGTGCAGAAGAGCCTTTCTTTCCTGAGAATTCCTACATGGATGTTGCATTCCTCTTAGACAATTCCAAAAACATCGCCAGCGATGACTTCCAAGCCGTGAAAGCGCTGGTGAGCTCAGTGATTGACAGCTTCCACATCACTTCAAACCCTTCAGCCTCAGAGTCTGGTGACAGGGTTGCTTTGCTGAGCTATTCTCCCTCAGAGAGCTCCAGAAGGAAGGGCAGGGTGAAGACAGAGTTTGCCTTTACAACCTACGACAACCAATCAATCATGAAGAACTACATCTACACTTCCCTTCAACAGCTCAATGGAGATGCTACTATTGGCCTTGCCCTACAGTGGGCCATGGAAGGTCTCTTCCTGGGAACCCCCAATCCAAGAAAACACAAGGTCATCATTGTGATTTCAGCTGGAGAAAACCATGAGGAGAAGGAATTTGTGAAGACGGTGGCTTTGAGGGCCAAATGTCAAGGCTATGTCGTATTTGTGATATCTCTGGGCTCCACACAAAGAGATGAGATGGAAGAATTAGCCAGCTACCCACTCGATCACCATCTGATACAGCTTGGGAGAATGTACAAGCCAGATCTGAATTATATTGTGAAATTTCTGAAGCCCTTTATATACTCGGTCAGAC
Seq C2 exon
GCGGATTTAATCAATACCCACCACCCACGCTGAAGGACGACTGCAGACTTGTTGAGTTAGAGAGGGGAGACACACTGCCCCATGGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091345-'46-41,'46-39,47-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.161
Domain overlap (PFAM):
C1:
NO
A:
PF0009223=VWA=WD(100=80.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types