BtaEX0009738 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012837 | COL6A6
Description
collagen, type VI, alpha 6 [Source:HGNC Symbol;Acc:HGNC:27023]
Coordinates
chr1:153331553-153339732:-
Coord C1 exon
chr1:153339636-153339732
Coord A exon
chr1:153335683-153336354
Coord C2 exon
chr1:153331553-153331649
Length
672 bp
Sequences
Splice sites
3' ss Seq
AAATGACTTTTGGTCTGCAGATG
3' ss Score
7.04
5' ss Seq
GGCGTAAGT
5' ss Score
9.39
Exon sequences
Seq C1 exon
ATTGACGACACAGGCAGATTCCAAGTCATCATTATCCCATCCGGAGCTGACTCTGCACCAGCACTCGAGGGACTCCAGCGGTGTACTTTCTGCTACG
Seq A exon
ATGTATGCAAGCCGGACGCTTCTTGCGATCAAGCCAGACCACCCCCTGTGCCATCTTACGTGGACGCTGCTTTCCTTCTGGACGGCTCCCGGCATGTGGGAAGTGCAGAATTTGAAGACATACGAGGATTCTTGGGGGCGCTGTTAGATCACTTCGAAATCACCCCAGAGCCCGAGTCCTCTGTCACCGGAGACCGGGTGGCCCTATTAAGCCTCAGTCCCCCTCACTTCCTACCCAACACTCAGAGGAGCCCTGTTAGAAGCGAATTCAACCTGACCACCTACAAGAGCAAACGCCTCATGAAGAGACACGTGGAAGAATCCGTTCAGCAGCCAAATGGAGATGCTTTTATTGGTCACGCCCTCCAGTGGACTCTGGACAATGTCTTCTCAAGGACACCCAATCTGAGAAGGAATAAAGTCATTTTTGTGGTATCTGCTGGGGAAACCAGTCACTTGGACAGGGAAACCTTAAAGCAAGAATCCTTGAGGGCCAAGTGTCAAGGTTATACCCTGTTTGTGTTTTCCCTTGGGCCTTCTTGGAATGACCAGGAACTGGAAGATCTAGCCAGCTACCCTTTGGATCACCACTTGATCCAGCTTGGCCGCATTCATAAGCCTGACCACAGATACGCTGTGAAGTTTGTGAAGGCTTTTATAAGCTCAGTCAGGC
Seq C2 exon
GTGCAATCAACAAATATCCACCAATAAATATCAAAGCAAAGTGCAACAGACTCAGCTCTATGGAGCCGCAGCAGCACCCACTCCAGTTTGTGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012837_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.062 C2=0.121
Domain overlap (PFAM):
C1:
PF0009223=VWA=PD(8.8=45.5)
A:
PF0009223=VWA=WD(100=79.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACACAGGCAGATTCCAAG
R:
CTTCGCACAAACTGGAGTGGG
Band lengths:
190-862
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development