HsaEX6058469 @ hg19
Exon Skipping
Gene
ENSG00000206384 | COL6A6
Description
collagen, type VI, alpha 6 [Source:HGNC Symbol;Acc:27023]
Coordinates
chr3:130377520-130383940:+
Coord C1 exon
chr3:130377520-130377616
Coord A exon
chr3:130380481-130381152
Coord C2 exon
chr3:130383847-130383940
Length
672 bp
Sequences
Splice sites
3' ss Seq
GAGTAACTTTTGGTTCACAGATG
3' ss Score
6.35
5' ss Seq
GGCGTAAGT
5' ss Score
9.39
Exon sequences
Seq C1 exon
ATTGACGACACTGGCACATTTCAAGTAATAGTGGTTCCCTCCGGGGCCGACTACATACCAGCATTAGAGAGACTCCAGCGGTGCACTTTCTGCTATG
Seq A exon
ATGTGTGCAAGCCAGATGCTTCTTGTGACCAAGCCAGACCACCCCCTGTGCAGTCTTACATGGATGCTGCTTTCCTTCTGGATGCCTCCCGGAACATGGGAAGTGCTGAATTTGAAGACATAAGAGCCTTCCTTGGAGCACTATTAGATCACTTTGAAATCACCCCAGAGCCGGAGACTTCTGTCACTGGAGACCGGGTGGCCCTATTGAGCCATGCTCCCCCCGACTTCCTACCCAACACTCAGAAGAGTCCAGTTAGAGCTGAGTTCAATCTTACCACCTACAGAAGTAAGCGCCTCATGAAGAGGCATGTGCACGAGTCAGTTAAACAACTAAATGGAGATGCTTTTATTGGTCATGCCTTACAGTGGACTCTGGACAATGTATTTTTAAGTACACCCAATCTGAGAAGAAACAAAGTCATATTTGTGATATCTGCTGGGGAAACCAGCCACTTAGATGGGGAAATCTTAAAGAAGGAATCCTTGCGAGCCAAATGTCAGGGATATGCCTTATTTGTGTTTTCCCTTGGCCCTATTTGGGATGACAAGGAACTGGAGGATCTCGCCAGCCACCCTTTGGATCACCACCTGGTCCAGCTTGGCCGAATTCATAAACCTGACCACAGTTATGGTGTGAAGTTTGTGAAGTCCTTTATAAACTCAATCAGGC
Seq C2 exon
GTGCAATCAACAAATATCCACCAATAAACTTAAAAATAAAGTGCAACAGACTTAACTCTATAGATCCAAAGCAGCCCCCACGACCATTCCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000206384-'36-37,'36-36,38-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.250
Domain overlap (PFAM):
C1:
PF0009223=VWA=PD(4.3=21.2)
A:
PF0009223=VWA=WD(100=80.0)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACGACACTGGCACATTTCA
R:
CTTCGGAATGGTCGTGGGG
Band lengths:
190-862
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)