MmuEX6068388 @ mm10
Exon Skipping
Gene
ENSMUSG00000043719 | Col6a6
Description
collagen, type VI, alpha 6 [Source:MGI Symbol;Acc:MGI:2444259]
Coordinates
chr9:105695713-105702294:-
Coord C1 exon
chr9:105702198-105702294
Coord A exon
chr9:105698661-105699332
Coord C2 exon
chr9:105695713-105695806
Length
672 bp
Sequences
Splice sites
3' ss Seq
CTAAATGACTTGGTTTGCAGATC
3' ss Score
6.35
5' ss Seq
GGCGTAAGT
5' ss Score
9.39
Exon sequences
Seq C1 exon
ATTGATGACACTGGCACATTCCAAGTCATTGTGGTTCCCTCCGGGTCTGATGAAGGGCCAGCGTTAGAGAGACTCCAGCGGTGCACTTTCTGCTATG
Seq A exon
ATCTATGCAAGCCGGATGCTTCGTGTGACCAAGCCAAACCACCCCCCATTCAGTCCTACCTGGACACTGCATTCCTACTGGATGGCTCTCGGCACGTGGGAAGTGCAGAGTTTGAAGACATGAGAGACTTTCTAGAGGCACTGCTAGATCACTTCGAAATCACTTCGGAGCCAGAGACATCTGTCACTGGAGACAGGGTGGCCCTGCTGAGCCATGCCCCCCTCGACTTCCTACCCAACACCCAGAGGAGTCCGGTTAGAACTGAGTTCAACCTAACCAGCTATAGCAGTAAGCGCCTCATGAAGAGACACGTGGATCAGGCAGTCCAGCAGCTGCATGGAGATGCTTTTCTTGGCCATGCCCTCGGGTGGGCACTGGACAACGTCTTTTTAAACACCCCCAATTTGAGACGAAACAAAGTCATATTTGTGATATCTGCTGGGGAAACCAGCCACCTGGATGCGGAAACCTTAAAGAAAGAGTCCCTACGAGCCAAATGTCATGGGTATGCCCTCTTTGTCTTTTCCTTGGGCCCTGACTGGGATGACAAGGAACTGGAAGACCTGGCCAGCCACCCCGTAGACCAGCACTTGATCCAGCTTGGCCGAATTCATAAACCTGACCACGGATACAGTGTGAAGTTTGTGAAGTCTTTTATAAACTCCATCAGGC
Seq C2 exon
ATGGGATAAACAAGTATCCACCGGTCAACCTCAAAGCCAAGTGCAACAGACTCGGCTCTAGGGATCTGAAGCCGCCCCCACGCCAGTTTCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043719-'40-46,'40-45,42-46=AN
Average complexity
A_S
Mappability confidence:
86%=80=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.406
Domain overlap (PFAM):
C1:
PF0009223=VWA=PD(6.6=33.3)
A:
PF0009223=VWA=WD(100=80.4)
C2:
NO
Main Skipping Isoform:
ENSMUST00000098441fB8080
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGACACTGGCACATTCCA
R:
CTTCGAAACTGGCGTGGGG
Band lengths:
190-862
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types