RnoEX0023501 @ rn6
Exon Skipping
Gene
ENSRNOG00000023007 | Col6a6
Description
collagen type VI alpha 6 chain [Source:RGD Symbol;Acc:1309172]
Coordinates
chr8:114360031-114366552:-
Coord C1 exon
chr8:114366456-114366552
Coord A exon
chr8:114363036-114363704
Coord C2 exon
chr8:114360031-114360124
Length
669 bp
Sequences
Splice sites
3' ss Seq
CTGAGTGACTTTGTTTGCAGACC
3' ss Score
6.69
5' ss Seq
GGCGTAAGT
5' ss Score
9.39
Exon sequences
Seq C1 exon
ATTGATGACACTGGTACATTCCAAGTCCTTGTGGTTCCCTCCAGGCCTGACCAAGTGCCAGCGTTAGAGAGACTCCAGCGGTGCACTTTCTGCTATG
Seq A exon
ACCTATGCAAGCCAGATGCTTCTTGTGACCAAGCCAAACCCCCCATTCAGTCCTACCTGGATGCTGCATTCCTGCTGGATAGCTCCTGGCATGTGGGAGGTGCAGAATTTGAAGACATGAGAGACCTCCTGGAGGCCCTGCTAGATCACTTTGAAATCGCTTCAGAGCCAGAGACGTCTGTCACTGGAGACAGGGTGGCCCTACTGAGTCATGCTCCCGTTGACTTCCTACCCAACACCCAGAGGAGTCCCGTTAGAACTGAGTTCAACCTAACCACCTATAGCAGTAAGCACCTCATGAAGAGACACGTGGAGCAAGCAGTCCAGCAGCTGAATGGAGATGCTTTCCTTGGTCATGCCCTCAGGTGGGCACTGGACAATGTCTTTCTAAACACGCCCAATCTGAGAAGGAACAAAGTCATATTTGTGATATCTGCTGGGGAAACCAGCCACCTGGATGCGGAAACCTTAAAGAAAGAGTCCCTGCGAGCCAAATGTCATGGGTATGCCCTCTTTGTGTTTTCCTTGGGCCCTGACTGGGATGACAAAGAACTGGAAGACCTGGCCAGCCACCCACTTGACCAGCACTTGATCCAGCTTGGCCGAATTCATAAACCTGACCACGGATATGGTGTAAAGTTTGTGAAGTCCTTTATAAACTCCATCAGGC
Seq C2 exon
ATGGGATAAACAAGTATCCACCGGTCAACTTTAAAGCCAAGTGCAGCAGACTCAGCTCGGCGGCTCCGAAGCTGTCCCCACGCCAGTTTCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023007-'40-42,'40-41,43-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.009 C2=0.062
Domain overlap (PFAM):
C1:
PF0009223=VWA=PD(6.0=30.3)
A:
PF0009223=VWA=WD(100=80.8)
C2:
NO
Main Skipping Isoform:
ENSRNOT00000056414fB3421
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGACACTGGTACATTCCAAGT
R:
CTTCGAAACTGGCGTGGGG
Band lengths:
190-859
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]