RnoEX0023495 @ rn6
Exon Skipping
Gene
ENSRNOG00000010663 | Col6a5
Description
collagen type VI alpha 5 chain [Source:RGD Symbol;Acc:1565804]
Coordinates
chr8:114531972-114543947:-
Coord C1 exon
chr8:114543739-114543947
Coord A exon
chr8:114533343-114534029
Coord C2 exon
chr8:114531972-114532068
Length
687 bp
Sequences
Splice sites
3' ss Seq
CTAAAGTTACTCTGTTGCAGAAC
3' ss Score
5.36
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
ATTGACGGCCAAGCTGCATGAGGTTTCTGCGAGCAAGAACAGTCCGGCTGGTCAAGAGCTGAAAGCCAGGAAAGACTTGTCTGTAGTGTTGGAGGATCACGGAGGTGACCATTTGGTTTACATTCCAACCCATATGGTAGAGCCACATAAGTTAGCGAGTCACTATGGAAATGACCAGGAGTCTGTTAGAATGGCAAGCCTCACTTCCG
Seq A exon
AACATGAAAATCATAGCAGAAGAGAACTGAGTCTTGCTCAAGAGCCTGGAGATGCTTCTCCTCAAGAATATTACATGGATGTGGCTTTCCTCATAGATGCTTCTCAACAAATAGGACATAATGCGTTTACAGAAGTGAGAGCTTTTATAACTTCAGTACTAGATTACTTTCACATCACCCCAGCTCCACTGACCTCTGTCTTAGGAGACAGAGTGGCTGTCCTGACCTATTCTCCTCCAGGCTATCTGCCAAACACGGAAGAATGCCCAGTCTACCTGGAATTCGATTTGGTCACTTACAACACTGTACACCAAATGAAGCGTCATCTCCAAGAGTCTCTTAAGCAACTCAATGGAGATGTTTTTCTTGGGCATGCCCTTCAGTGGACAATTGACAATGTCTTTGTAGGAACACCCAATCTGAGGAAAAACAAAGTTATCTTTATAGTAACTGCAGGGGAAACCAACCCGTTAGACAAAGAAGTTTTAAGGAATGCATCTCTGAGAGCCAAGTGCCAAGGCTACTCCATATTTGTATTTTCCTTCGGTCCTGTACACAATGACTTGGAGTTAGAAGAATTAGCAAGTCACCCCCTGGAGCATCACTTAGTCCGGCTTGGTCGGGTACACAAGCCAGATTTGGACTATATCATCAAGTTCATCAAGCCATTTGTTCATTCAATCAGAC
Seq C2 exon
GTGCTATCAACAAATATCCTAGCAGAGACCTGCAAGCCAAGTGTGCTAATCTCACTTTCCCTGGCCTGGAGAATGCTGGCACAGAAGACAGTATATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010663-'46-42,'46-41,48-42
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.451 A=0.074 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009223=VWA=WD(100=80.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGACGGCCAAGCTGCATG
R:
TACTGTCTTCTGTGCCAGCAT
Band lengths:
302-989
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]