RnoEX6037316 @ rn6
Exon Skipping
Gene
ENSRNOG00000010663 | Col6a5
Description
collagen type VI alpha 5 chain [Source:RGD Symbol;Acc:1565804]
Coordinates
chr8:114531060-114534029:-
Coord C1 exon
chr8:114533343-114534029
Coord A exon
chr8:114531972-114532068
Coord C2 exon
chr8:114531060-114531292
Length
97 bp
Sequences
Splice sites
3' ss Seq
GAATTCCACTCTGTTTCCAGGTG
3' ss Score
9.17
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
ACTGACCTCTGTCTTAGGAGACAGAGTGGCTGTCCTGACCTATTCTCCTCCAGGCTATCTGCCAAACACGGAAGAATGCCCAGTCTACCTGGAATTCGATTTGGTCACTTACAACACTGTACACCAAATGAAGCGTCATCTCCAAGAGTCTCTTAAGCAACTCAATGGAGATGTTTTTCTTGGGCATGCCCTTCAGTGGACAATTGACAATGTCTTTGTAGGAACACCCAATCTGAGGAAAAACAAAGTTATCTTTATAGTAACTGCAGGGGAAACCAACCCGTTAGACAAAGAAGTTTTAAGGAATGCATCTCTGAGAGCCAAGTGCCAAGGCTACTCCATATTTGTATTTTCCTTCGGTCCTGTACACAATGACTTGGAGTTAGAAGAATTAGCAAGTCACCCCCTGGAGCATCACTTAGTCCGGCTTGGTCGGGTACACAAGCCAGATTTGGACTATATCATCAAGTTCATCAAGCCATTTGTTCATTCAATCAGAC
Seq A exon
GTGCTATCAACAAATATCCTAGCAGAGACCTGCAAGCCAAGTGTGCTAATCTCACTTTCCCTGGCCTGGAGAATGCTGGCACAGAAGACAGTATATT
Seq C2 exon
ACTCATCCCTGAGGTATATCAAATCGAGTCAGGAGAGAGTGAGCTGTCTGGATACTCCGGTTCTCAGGAGCAGCCTTTCTTCCTCCTAGGGAAGGGTAATGATAACGGGTCAGAAGGCACTGCTGATCTCATGCAGCACCTGTACCTGCTCTTCTCCTCTGGAGAACTCATGGTGAATGATGAAGAAGAGCCGTGTTCTGAAGAGACCTCAGCTCCAGCGAACGGCAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010663-'48-43,'48-42,49-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.000 C2=0.361
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=80.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTAGCAAGTCACCCCCTGGA
R:
CCGGAGTATCCAGACAGCTCA
Band lengths:
170-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]