MmuEX0003016 @ mm9
Exon Skipping
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:79474020-79474780:+
Coord C1 exon
chr10:79474020-79474143
Coord A exon
chr10:79474458-79474587
Coord C2 exon
chr10:79474660-79474780
Length
130 bp
Sequences
Splice sites
3' ss Seq
AGTTCTTCCTGTCCCCGTAGGAG
3' ss Score
10.62
5' ss Seq
ACAGTCAGT
5' ss Score
0.29
Exon sequences
Seq C1 exon
AACCTGCAAGAAGTGAGCCGGATCCTGAAACAAGTGTTTCTTATTTTCCCCCACTTTTGCCTTGGCCGAGGGCTCATTGACATGGTTCGGAACCAGGCCATGGCAGATGCCTTTGAGCGCTTAG
Seq A exon
GAGACAAGCAATTTCAGTCACCCCTACGCTGGGACATCATTGGCAAGAACCTCCTGGCCATGATGGCCCAGGGACCTCTGTTCCTCCTCATCACACTCCTGCTCCAACACCGCAACCGTCTCCTGCCACA
Seq C2 exon
ATCAAAACCAAGACTGCTGCCGCCCCTGGGGGAGGAGGATGAGGATGTGGCTCAAGAGCGTGAGCGGGTGACCAAGGGGGCTACCCAGGGGGATGTGCTAGTCCTCAGGGACTTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.488
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.1=100)
A:
PF126982=ABC2_membrane_3=PD(9.8=75.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAAGAAGTGAGCCGGATC
R:
CTTGGTCAAGTCCCTGAGGA
Band lengths:
242-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: