RnoEX6030636 @ rn6
Exon Skipping
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12745796-12746546:-
Coord C1 exon
chr7:12746423-12746546
Coord A exon
chr7:12745989-12746118
Coord C2 exon
chr7:12745796-12745916
Length
130 bp
Sequences
Splice sites
3' ss Seq
AGTCCTTTCTGTTCCCACAGGAG
3' ss Score
10.48
5' ss Seq
ACAGTCAGT
5' ss Score
0.29
Exon sequences
Seq C1 exon
AACCTTCAAGAAGTGAGCCGGATCCTGAAGCAAGTGTTTCTTATCTTCCCCCACTTCTGCCTTGGCCGAGGGCTCATTGACATGGTGCGGAACCAGGCCATGGCAGATGCCTTTGAGCGCTTAG
Seq A exon
GAGACAAGCAATTCCAGTCGCCCCTACGCTGGGACATCATTGGCAAGAACCTCCTGGCCATGGTGGCCCAGGGGCCCCTGTTCCTCCTAATCACACTCCTGCTCCAACATCGCAACCGCCTCCTGCCACA
Seq C2 exon
ACCAAAATCAAGACTGCCGCCGCCCCTGGGGGAGGAGGATGAGGATGTGGTTCGAGAGCGTGAGCGGGTGACCAAGGGAGCCACCCAGGGGGATGTGCTGGTCCTCAGGGACTTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939-'53-59,'53-57,55-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.549
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.5=100)
A:
PF126982=ABC2_membrane_3=PD(10.1=75.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCAAGAAGTGAGCCGGA
R:
CTTGGTCAAGTCCCTGAGGA
Band lengths:
244-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]