DreEX6090515 @ danRer10
Exon Skipping
Gene
ENSDARG00000074221 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr11:5699702-5700244:+
Coord C1 exon
chr11:5699702-5699825
Coord A exon
chr11:5699907-5700036
Coord C2 exon
chr11:5700121-5700244
Length
130 bp
Sequences
Splice sites
3' ss Seq
CACTATGAATTTGTCACCAGGAA
3' ss Score
6.68
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
CATTTGAACGAGGTCAACAGGATCCTGAAGAAGGTCTTTCTGATATTTCCTCACTTCTGTCTGGGTCGAGGTCTCATAGACATGGCTAAAAACCAGGCCATGGCAGACGCATTTCAGCGGCTTG
Seq A exon
GAACCAAACAGAATCTGGATCCTTTATCCTGGGATTTTGTTGGGAAGAACCTGTTTGCCATGGCGATGGAAGGGATTGTGTTCTTCCTCTTTACTGTTCTCCTGCAGTATAAGTTCTTTGTTAATTTTAG
Seq C2 exon
TCGGTGGTCAGGTTTTGTTCTGCCCCCGCTGGGCATGGAGGACGAAGATGTGGCGAGAGAGAGGGAGCGTGTGAAGAACGGTAGAGCGCTTGGAGACATTCTCATCCTCTCAGACCTTAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074221-'38-40,'38-39,40-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(11.0=100)
A:
PF126982=ABC2_membrane_3=PD(8.8=75.0)
C2:
NO
Main Inclusion Isoform:
ENSDART00000113281fB2
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACGAGGTCAACAGGATCCT
R:
TGCTAAGGTCTGAGAGGATGAGA
Band lengths:
242-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]