GgaEX6027987 @ galGal3
Exon Skipping
Gene
ENSGALG00000002453 | ABCA7
Description
NA
Coordinates
chr28:2378982-2379531:-
Coord C1 exon
chr28:2379396-2379531
Coord A exon
chr28:2379189-2379318
Coord C2 exon
chr28:2378982-2379102
Length
130 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTCCTCCTTTTATAGGAG
3' ss Score
11.66
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
Exon sequences
Seq C1 exon
AAGCTCAACAACATCAACCGCATCCTGAAGAAGGTCTTCCTCATCTTCCCCCACTTCTGCCTGGGCCGAGGCTTAATTGACATGGTGAAGAACCAGGCGATGGCCGATGCCTTCGAGAGGTTCGGTGAGTGCAGAG
Seq A exon
GAGACAAGCGCTTCGTGTCCCCGCTGTCCTGGGACTTAGCAGGGAAGAACATGTTTGCCATGGCCATCGAGGGCACCATCTTCTTCCTCTTCACCGTACTGCTGCAGTACCGCTTCTTCCTGCGGCTCCG
Seq C2 exon
ACCACGTGCTCTGCAGCTGCCCTCACTGGGGGATGAGGATGAGGACGTAGCCCGGGAGCGGGCGCGGGTGGGCAGCACCACACGGCGCAGTGCCGTCCTGCTGCTGAAGGACCTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453-'27-28,'27-27,28-28=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.073
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(13.7=100)
A:
PF126982=ABC2_membrane_3=PD(10.0=75.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCAACAACATCAACCGCA
R:
CTTGGTCAGGTCCTTCAGCAG
Band lengths:
256-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]