GgaEX1005312 @ galGal4
Exon Skipping
Gene
ENSGALG00000015433 | ABCA1
Description
ATP-binding cassette sub-family A member 1 [Source:RefSeq peptide;Acc:NP_989476]
Coordinates
chrZ:54554311-54555380:-
Coord C1 exon
chrZ:54555257-54555380
Coord A exon
chrZ:54554557-54554686
Coord C2 exon
chrZ:54554311-54554431
Length
130 bp
Sequences
Splice sites
3' ss Seq
TCGTCTTCTCATCTTGGCAGGTG
3' ss Score
10.03
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
AAGCTGAACAACATCAATGACATCTTGAAGTCTGTCTTTCTTATCTTCCCTCACTTCTGCCTGGGGCGGGGTCTTATTGACATGGTGAAAAATCAGGCCATGGCTGATGCTCTGGAGAGGTTTG
Seq A exon
GTGAGAATCGTTTTGTGTCCCCTCTGTCATGGGACCTGGTGGGAAGGAACCTGTTTGCCATGGCAGTGGAGGGTGTGGTCTTCTTCCTCATTACTGTGCTCATCCAGTACAGATTCTTCATCAAACCCAG
Seq C2 exon
GCCTGTCTATGCCAAGTTACCTCCTGTGAATGATGAAGATGAAGATGTAAACAGAGAAAGGCAGAGAATAATAAGCGGAGGAGGACAGAGTGACATACTAGAAATCAGGGAGCTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433-'56-76,'56-75,59-76
Average complexity
S
Mappability confidence:
100%=83=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.146
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(11.2=100)
A:
PF126982=ABC2_membrane_3=PD(9.0=75.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGAACAACATCAATGACATCT
R:
CAGCTCCCTGATTTCTAGTATGTCAC
Band lengths:
238-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]