MmuEX6093499 @ mm9
Exon Skipping
Gene
ENSMUSG00000015243 | Abca1
Description
ATP-binding cassette, sub-family A (ABC1), member 1 [Source:MGI Symbol;Acc:MGI:99607]
Coordinates
chr4:53055186-53057110:-
Coord C1 exon
chr4:53056987-53057110
Coord A exon
chr4:53055536-53055665
Coord C2 exon
chr4:53055186-53055306
Length
130 bp
Sequences
Splice sites
3' ss Seq
GTCTGCATTGTGTCTCACAGGGG
3' ss Score
8.87
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AAGCTCAATGACATCAATGACATCCTGAAGTCTGTGTTTCTTATCTTCCCACATTTTTGCCTGGGGCGAGGGCTCATCGACATGGTGAAGAACCAGGCCATGGCCGATGCCCTGGAGAGGTTTG
Seq A exon
GGGAGAACCGCTTCGTCTCTCCGCTCTCTTGGGACTTGGTAGGACGGAACCTTTTTGCCATGGCCGTGGAAGGGGTGGTGTTCTTCCTCATTACTGTTCTGATCCAGTACAGATTTTTCATCAGGCCCAG
Seq C2 exon
ACCTGTAAAGGCGAAGCTTCCTCCTTTGAATGACGAGGATGAGGATGTGAGGCGGGAGAGACAGAGGATTCTGGACGGTGGCGGACAGAATGACATCCTAGAGATCAAGGAACTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015243-'42-44,'42-43,43-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.268
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(7.8=100)
A:
PF126982=ABC2_membrane_3=PD(6.3=75.0)
C2:
PF0000522=ABC_tran=PU(10.3=36.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCAATGACATCAATGACATCCT
R:
TGGTCAGTTCCTTGATCTCTAGGA
Band lengths:
242-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: