DreEX6033522 @ danRer10
Exon Skipping
Gene
ENSDARG00000074635 | abca1a
Description
ATP-binding cassette, sub-family A (ABC1), member 1A [Source:ZFIN;Acc:ZDB-GENE-031006-12]
Coordinates
chr1:51981054-51982045:+
Coord C1 exon
chr1:51981054-51981177
Coord A exon
chr1:51981592-51981721
Coord C2 exon
chr1:51981925-51982045
Length
130 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCTGAATGTTTTCAGGAG
3' ss Score
8
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAGATCGGCGGCATCAATGACATCTTGAAGAACGTGTTTCTGATCTTCCCTCATTTCTGTCTGGGTCGAGGACTCATTGATATGGTGAAGAACCAAGCTATGGCTGACGCGCTGGAGCGATTCG
Seq A exon
GAGAGAATCGTTTCCGCTCTCCTCTGGCGTGGGACATGGTGGGCAAGAATCTGTTCGCTATGGCCATCGAGGGCGTGATTTTCTTCAGCATCACCGTCCTCATCCAGTACCGCTTCTGCATTAAGGCCAG
Seq C2 exon
GTCACTTAGCACTAAGCTGAAGCCAATCGGAGAGGAGGATGAGGACGTAGCCCGAGAGAGGCAAAGGATTCTGGGAGGAGGAGGACAGACTGATATCCTGGAGCTCAGGCAGCTCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074635-'42-44,'42-43,43-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.049
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(11.4=100)
A:
PF126982=ABC2_membrane_3=PD(9.2=75.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGGCGGCATCAATGACATC
R:
CTTGGTGAGCTGCCTGAG
Band lengths:
242-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]