BtaEX0001674 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020661 | ABCA1
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 1 (ABCA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001024693]
Coordinates
chr8:96282811-96285111:-
Coord C1 exon
chr8:96284988-96285111
Coord A exon
chr8:96283197-96283326
Coord C2 exon
chr8:96282811-96282931
Length
130 bp
Sequences
Splice sites
3' ss Seq
GATATCTGCACTGTGTCCAGGGG
3' ss Score
4.98
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AAGCTGAATAACATCAATGATATCCTGAAGTCAGTGTTCTTGATCTTCCCACATTTTTGCCTGGGACGGGGGCTCATTGACATGGTGAAAAACCAGGCAATGGCTGATGCCTTGGAAAGGTTTG
Seq A exon
GGGAGAACCGCTTTGTCTCACCACTGTCTTGGGACTTAGTGGGACGAAATCTCTTTGCCATGGCTGTGGAAGGAGTGGTGTTCTTCCTCATCACTGTGCTGATCCAGTACCGATTCTTCATCAGGCCCAG
Seq C2 exon
ACCTGTAAAGGCAAAGCTTCCTCCTCTGAATGATGAGGATGAAGATGTGAAGAGGGAAAGACAGAGAATTCTTGATGGTGGAGGACAGAATGACATCTTGGAAATCAAGGAGTTGACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020661_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.220
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(7.8=100)
A:
PF126982=ABC2_membrane_3=PD(6.3=75.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGAATAACATCAATGATATCCTG
R:
TTCCAAGATGTCATTCTGTCCTCC
Band lengths:
226-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development