DreEX0009898 @ danRer10
Exon Skipping
Gene
ENSDARG00000079009 | abca1b
Description
ATP-binding cassette, sub-family A (ABC1), member 1B [Source:ZFIN;Acc:ZDB-GENE-030131-9826]
Coordinates
chr14:6193932-6195728:+
Coord C1 exon
chr14:6193932-6194055
Coord A exon
chr14:6195399-6195528
Coord C2 exon
chr14:6195608-6195728
Length
130 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTACCTTACATAAGGTG
3' ss Score
4.52
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
GAAATTGGAGGAATTAATGACATCCTGAAGAACGTTTTGCTCATCTTCCCACATTTCTGCCTGGGTCGAGGTCTCATCGACATGGTGAAGAATCAGGCCATGGCTGACGCTCTGGAGAGATTTG
Seq A exon
GTGAGAACCGTTTCCGTTCTCCACTGGAGTGGGACATGGTGGGTAAGAATCTTTTCGCTATGGCTGTGGAGGGTGTGGTTTTCTTCATTATCACCGTCCTCATCCAGTACAGATTCTTCTTTGAACCCAA
Seq C2 exon
GTCTTTATGTCCTAAATTGAGTCCGATTGGAGAGGAAGATGAAGATGTAGCCAGAGAGAGGCAGAGGATCATGAGTGGGGCCGGACAGGGAGACATTCTCGAACTCCGACAGCTCACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079009-'44-50,'44-49,45-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.049
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.6=100)
A:
PF126982=ABC2_membrane_3=PD(10.2=75.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGGAGGAATTAATGACATCCTGA
R:
CTTAGTGAGCTGTCGGAGTTCG
Band lengths:
242-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]