MmuEX0006145 @ mm9
Exon Skipping
Gene
ENSMUSG00000038352 | Arl5c
Description
ADP-ribosylation factor-like 5C [Source:MGI Symbol;Acc:MGI:3028577]
Coordinates
chr11:97855652-97857495:-
Coord C1 exon
chr11:97857132-97857495
Coord A exon
chr11:97856381-97856441
Coord C2 exon
chr11:97855652-97855799
Length
61 bp
Sequences
Splice sites
3' ss Seq
CTTCCCCTGGATGCCTCCAGAGC
3' ss Score
6.28
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
TCACTCTACTCGCAACACTAAAGCAGATAGTTCCAACTTCAGTTTTCTCAGGGTAAAGAGGACTCTGGGATTTTCCTTGCACTTTCCTGCCCCTAGACAAATACCTAGTCTTCGTGGTGACGCCACTCAGACCCTCAGCACCGAGAAAGAGCCAGCGTCCGGTGGGATTCCCAGGTCTCGAGGGTGACGCTTGGGGTTCCGCACATTTGATAGGAGCAGCGGGTCTGGCCCTCCCCCAGGCAGGGCTTTGAAGATTTGGGGCCAGACTCTGGTCCTGGAGGCTGCTGAGCCCCGCCCGCCCCCAGCTCCGGGAGTGCCATGGGACAGCTGATAGCCAAGCTGATGCGAATCTTTGGGAGTCAGG
Seq A exon
AGCACAAAGTCATTATCGTGGGACTGGACAATGCAGGGAAGACCACCATTCTCTACCAGTT
Seq C2 exon
CCTGACCAATGAGGTTGTTCACACCTGCTCCACCATTGGGAGCAACGTGGAAGAAATTGTTCTTCGGAAGACTCACTTCCTCATGTGGGACCTAGGGGGCCAGGAGGCGCTGCGCTCCACCTGGGACACTTACTACTCTAATGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038352_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.052
Domain overlap (PFAM):
C1:
PF128032=G-7-MTase=PU(23.0=87.5),PF0002516=Arf=PU(8.5=93.8),PF0282614=2-Hacid_dh_C=PU(5.2=43.8)
A:
PF128032=G-7-MTase=FE(32.8=100),PF0002516=Arf=FE(11.4=100),PF0282614=2-Hacid_dh_C=FE(14.8=100)
C2:
PF128032=G-7-MTase=PD(42.6=52.0),PF0002516=Arf=FE(27.8=100),PF0282614=2-Hacid_dh_C=FE(36.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGCTGATAGCCAAGCTG
R:
CCCTAGGTCCCACATGAGGAA
Band lengths:
140-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: