BtaEX6088290 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002035 | ARL5C
Description
ADP-ribosylation factor-like 5C [Source:HGNC Symbol;Acc:HGNC:31111]
Coordinates
chr19:40319250-40322443:+
Coord C1 exon
chr19:40319250-40319452
Coord A exon
chr19:40320077-40320137
Coord C2 exon
chr19:40322360-40322443
Length
61 bp
Sequences
Splice sites
3' ss Seq
CTTCCCCCGGATGCTTCCAGAGC
3' ss Score
5.18
5' ss Seq
GTTGTAAGA
5' ss Score
3.54
Exon sequences
Seq C1 exon
CCCAGGCCCCTTAGGGGACAGACTCGCGGGGCTTCAGGGACTTCATAGGTAAAGTTTGTGACAGCCTTCCCCAGGGGTAGGGGCTCCAAGCATCTGGGCTCGACCTGGGCCCCCGAAGACCCCCCGAGTCCTAGCCCTGTCTGACTCGGGACATGCCATGGGACAACTGATGGCCAAGTTGATGAGCATCTTCTGGGAACGGG
Seq A exon
AGCACAAGGTTATCATCGTGGGACTGGACAATGCAGGGAAGACCACCATTCTCTACCAGTT
Seq C2 exon
TTCATCATCCTTGTGATTGACAGCACAGACCGGGACCGGCTGCTGACCACTCGAGAGGAGCTGTATAAGATGCTGGCCCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002035-'0-3,'0-0,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=PU(8.8=78.9)
A:
PF0002516=Arf=FE(11.8=100)
C2:
PF0002516=Arf=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTAGCCCTGTCTGACTCG
R:
TACAGCTCCTCTCGAGTGGTC
Band lengths:
141-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]