DreEX0014789 @ danRer10
Exon Skipping
Gene
ENSDARG00000094709 | arl8
Description
ADP-ribosylation factor-like 8 [Source:ZFIN;Acc:ZDB-GENE-030131-5762]
Coordinates
chr7:41440191-41446584:-
Coord C1 exon
chr7:41446048-41446584
Coord A exon
chr7:41441938-41441998
Coord C2 exon
chr7:41440191-41440338
Length
61 bp
Sequences
Splice sites
3' ss Seq
TTATGTTTTTTTTTTTGTAGAAC
3' ss Score
9.81
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
AGCAGCAGCAGCGTGCTGCCGTGAGCTCCGTGTGCCTCAATTTTACTCCAATGAGCTCTTATGTCTTACCATTTACACCCGTGTCCAGACAAGTGGAGCCGGTGTGCGTTTTGCAATTTGTCTTTAAGGAAAATGTTGATGAGCTCAGAGTGATCTGGGAAGTGAAGAAGACGCTTTTGTTTTGGTTAACGATGTATCCGCCGTACTCGCGTCTGTCGCACACTTGATCTGACCGCACGAAAGAAGAGCTGTTCATCTTAACCTACCTGTGTGAAAACACCGCGAACACACACAGACAGAGGGACGCTCGGACAGACGCAGAGGCGTGTGGTGAGTGCTCTTAACCGCATGGCGAGAGCGGGTTTATAAAGAAATAACGGCTCCACGGACAGCTGCTGTAGGCCTCTCCGCAAAACTAGCCCTCGCTGGACACGGCCTCTCACCCACCAGAGAAATGGGTCTAATCTTCGCCAAACTATGGAGCTTCTTTTGTAATCAAG
Seq A exon
AACACAAGGTGATTATTGTGGGATTGGACAACGCTGGGAAAACAACTATACTTTATCAGTT
Seq C2 exon
TTTAATGAATGAGGTGGTGCACACATCTCCTACGATTGGCAGCAATGTGGAAGAAATAGTGGTGAAGAAAACCCACTTCCTGATGTGGGATATTGGTGGTCAAGAGAGTCTCCGCTCTTCCTGGAACACATACTACTCCAACACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094709-'0-2,'0-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=PU(8.5=93.8),PF128032=G-7-MTase=PU(20.0=75.0)
A:
PF0002516=Arf=FE(11.4=100),PF128032=G-7-MTase=FE(33.3=100)
C2:
PF0002516=Arf=FE(27.8=100),PF128032=G-7-MTase=PD(45.0=54.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTAGGCCTCTCCGCAAAAC
R:
CGTAGGAGATGTGTGCACCAC
Band lengths:
139-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]