HsaEX0005870 @ hg38
Exon Skipping
Gene
ENSG00000165997 | ARL5B
Description
ADP ribosylation factor like GTPase 5B [Source:HGNC Symbol;Acc:HGNC:23052]
Coordinates
chr10:18659405-18668677:+
Coord C1 exon
chr10:18659405-18659683
Coord A exon
chr10:18666575-18666635
Coord C2 exon
chr10:18668530-18668677
Length
61 bp
Sequences
Splice sites
3' ss Seq
GATTTGCTTTCTTTTTGTAGAAC
3' ss Score
8.84
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GGGGACTACGGGTCGGCGTTGGGCTCAGTGGGCTCGAAACAAAGGGCTGTCCGGTGGGGATTCGTCGCGGCGCCTTCTGAGTGGTCGGGTCGAGGCTTCTCGGCCTAGCAGTGCCCTCGCTGCGCGATCTCAGGCGGGTTCTCCTCGGCTCCGCGCAGCCCGCGCCGCGGTGGGGGACCCGGCGCAGCGGCACCTGCTGCCGAGGGACCCCGCGGCCCGCCCCGGTGCTCGTGATGGGGCTGATCTTCGCCAAACTGTGGAGCCTCTTCTGTAACCAAG
Seq A exon
AACACAAAGTAATTATAGTGGGACTGGATAATGCAGGGAAAACCACCATTCTTTACCAATT
Seq C2 exon
CTTAATGAATGAAGTGGTTCATACTTCTCCAACCATAGGAAGCAATGTTGAAGAAATAGTTGTGAAGAACACTCATTTTCTTATGTGGGATATTGGTGGTCAGGAGTCTCTGCGATCATCCTGGAACACATATTACTCAAATACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165997-'4-3,'4-1,12-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=PU(8.5=93.8),PF128032=G-7-MTase=PU(19.7=75.0)
A:
PF0002516=Arf=FE(11.4=100),PF128032=G-7-MTase=FE(32.8=100)
C2:
PF0002516=Arf=FE(27.8=100),PF128032=G-7-MTase=PD(45.9=56.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAGCCTCTTCTGTAACCA
R:
GATCGCAGAGACTCCTGACCA
Band lengths:
141-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development