GgaEX0012510 @ galGal3
Exon Skipping
Gene
ENSGALG00000008557 | E1BQL0_CHICK
Description
NA
Coordinates
chr2:19013935-19022430:-
Coord C1 exon
chr2:19022210-19022430
Coord A exon
chr2:19015355-19015415
Coord C2 exon
chr2:19013935-19014082
Length
61 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTCCATATACACAGAGC
3' ss Score
8.19
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
GCCGCGTGGGAGCTGGGGCGGCCCTCGGCCAGGGGCGGGGCCTCGCTCATGCCCGCCCCTTCAACCGCCCGCCCGCCGCTCCTGGGTCGCGTCTGCTCGGGGCCGCCGACACCACCGCTGTAGTCGTCGCTGCCTCTCCGGGTTCCGAGTGCCCCGAGGTGAGGCTGGGCCAGGCATGGGCCTGATCTTCGCCAAGCTGTGGAGTCTCTTTGGGAACCAAG
Seq A exon
AGCATAAAGTAATCATAGTGGGGCTTGATAATGCTGGAAAGACGACCATCCTTTACCAGTT
Seq C2 exon
CTTAATGAATGAAGTGGTTCATACTTCTCCAACCATAGGAAGCAATGTAGAAGAAATAGTGGTGAAAAACACCCATTTCTTAATGTGGGATATCGGAGGACAAGAATCGTTACGGTCATCATGGAATACCTACTATTCAAACACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008557_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF128032=G-7-MTase=PU(19.7=75.0),PF0002516=Arf=PU(8.5=93.8)
A:
PF128032=G-7-MTase=FE(32.8=100),PF0002516=Arf=FE(11.4=100)
C2:
PF128032=G-7-MTase=PD(45.9=56.0),PF0002516=Arf=FE(27.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTGGAGTCTCTTTGGGA
R:
CCGTAACGATTCTTGTCCTCCG
Band lengths:
142-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]