RnoEX0011631 @ rn6
Exon Skipping
Gene
ENSRNOG00000018714 | Arl5b
Description
ADP-ribosylation factor like GTPase 5B [Source:RGD Symbol;Acc:1305569]
Coordinates
chr17:82065937-82080727:+
Coord C1 exon
chr17:82065937-82066200
Coord A exon
chr17:82079045-82079105
Coord C2 exon
chr17:82080580-82080727
Length
61 bp
Sequences
Splice sites
3' ss Seq
TGACTTTTTTTTCCCCTTAGAGC
3' ss Score
11.28
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
AGGTGGGCGCAGACAGAGCGACTACGGGTCGGGGCTGGGCTCATCGTGCTGCGAACAAAGGAGTCTGCGGCGGTTCCCGGTTCCGCCGAGGACCAAAGCTTCGCTGGACTCTTGAGGCTCCGCGGCTCCGGGTCGGCTTCCCCTCGGTTCCACCGCGGGCGCCGCGGCACCTGCCGCCGAGTGCTGCCCCAGGAAGCCTGTCCCGTCCGGGGCTCATGATGGGGCTGATCTTCGCTAAACTGTGGAGCCTTTTCTGTAACCAAG
Seq A exon
AGCACAAAGTAATCATTGTGGGACTGGACAACGCGGGGAAAACCACCATTCTTTATCAATT
Seq C2 exon
CTTAATGAATGAAGTAGTTCATACTTCTCCAACCATAGGAAGCAATGTTGAAGAAATAGTTGTGAAGAACACTCATTTTCTTATGTGGGACATCGGTGGTCAGGAGTCTCTGAGGTCATCCTGGAACACCTATTACTCAAACACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018714-'0-1,'0-0,2-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=PU(8.5=88.2),PF128032=G-7-MTase=PU(19.7=70.6)
A:
PF0002516=Arf=FE(11.4=100),PF128032=G-7-MTase=FE(32.8=100)
C2:
PF0002516=Arf=FE(27.8=100),PF128032=G-7-MTase=PD(45.9=56.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGCTGATCTTCGCTAAAC
R:
TGACCACCGATGTCCCACATA
Band lengths:
147-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]